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Report for CCDS4793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4793.1 Public Homo sapiens 6 PACSIN1 24 110 108 CCDS HistoryNCBI Gene:29993Re-query CCDS DB by CCDS ID:4793.1Re-query CCDS DB by GeneID:29993See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244458.7 ENSP00000244458.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244458.7Link to Ensembl Protein Viewer:ENSP00000244458.2Re-query CCDS DB by Nucleotide ID:ENST00000244458Re-query CCDS DB by Protein ID:ENSP00000244458
Original member Current member EBI ENST00000538621.2 ENSP00000439639.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538621.2Link to Ensembl Protein Viewer:ENSP00000439639.1Re-query CCDS DB by Nucleotide ID:ENST00000538621Re-query CCDS DB by Protein ID:ENSP00000439639
Original member Current member EBI ENST00000620693.4 ENSP00000484060.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620693.4Link to Ensembl Protein Viewer:ENSP00000484060.1Re-query CCDS DB by Nucleotide ID:ENST00000620693Re-query CCDS DB by Protein ID:ENSP00000484060
Original member Current member NCBI NM_001199583.3 NP_001186512.1 Accepted alive Link to Nucleotide Sequence:NM_001199583.3Link to Protein Sequence:NP_001186512.1Re-query CCDS DB by Nucleotide ID:NM_001199583Re-query CCDS DB by Protein ID:NP_001186512Link to BLAST:NP_001186512.1
Original member Current member NCBI NM_020804.5 NP_065855.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020804.5Link to Protein Sequence:NP_065855.1Re-query CCDS DB by Nucleotide ID:NM_020804Re-query CCDS DB by Protein ID:NP_065855Link to BLAST:NP_065855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186512.1 444 Q9BY11 444 100% 0 0
NP_065855.1 444 Q9BY11 444 100% 0 0

Chromosomal Locations for CCDS 4793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34526306 34526368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34527332 34527488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34528642 34528877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34529397 34529552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34529666 34529841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34530243 34530363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34530460 34530587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34531600 34531787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34532421 34532530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGTCCAGCTCCTACGATGAGGCCTCACTGGCGCCAGAGGAGACCACCGACAGCTTCTGGGAGGTGGGGA
ACTACAAGCGGACCGTGAAGCGCATCGATGACGGCCACCGTCTATGCAACGACCTGATGAACTGCGTGCA
GGAGCGCGCCAAGATCGAGAAGGCGTACGGGCAGCAGCTCACCGACTGGGCCAAGCGTTGGCGCCAGCTC
ATCGAGAAAGGCCCACAGTATGGCAGCCTGGAGCGGGCCTGGGGTGCCATAATGACAGAGGCAGACAAGG
TGAGCGAGCTGCACCAGGAGGTGAAGAACAATCTGCTGAATGAGGACCTGGAGAAGGTGAAGAACTGGCA
GAAGGACGCCTATCACAAGCAGATCATGGGTGGCTTCAAGGAGACGAAGGAGGCTGAAGATGGCTTCCGC
AAGGCCCAGAAGCCTTGGGCCAAGAAGATGAAGGAGCTGGAGGCAGCCAAGAAGGCCTACCATTTGGCTT
GCAAAGAGGAAAAGCTGGCCATGACACGGGAGATGAACAGCAAGACGGAGCAATCGGTCACACCTGAGCA
GCAAAAGAAGCTGCAGGACAAAGTGGACAAGTGCAAGCAGGATGTGCAGAAGACACAGGAGAAGTATGAG
AAAGTGCTGGAAGATGTGGGCAAGACCACACCCCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAAT
GCCAGCAATTTGAGGAAAAGCGGCTGGTCTTCCTCAAGGAGGTGCTGCTGGACATCAAACGGCACCTCAA
CCTGGCTGAGAACAGCAGCTACATCCATGTGTACCGTGAGCTGGAGCAGGCCATCCGGGGGGCTGATGCC
CAGGAAGACCTCAGATGGTTCCGCAGCACCAGTGGCCCCGGCATGCCCATGAACTGGCCCCAGTTTGAGG
AGTGGAACCCAGACCTTCCTCACACCACCACCAAGAAGGAGAAACAGCCTAAGAAGGCAGAGGGAGTGGC
GCTGACCAATGCCACTGGGGCGGTAGAGTCCACATCCCAGGCTGGGGACCGCGGCAGTGTTAGCAGCTAC
GACAGAGGCCAGCCCTACGCCACCGAGTGGTCAGACGACGAGAGTGGGAACCCCTTTGGGGGCAGTGAGA
CCAACGGGGGCGCCAACCCCTTTGAGGACGACTCCAAGGGAGTGCGCGTGCGGGCACTCTACGACTATGA
CGGCCAGGAGCAGGACGAGCTCAGCTTTAAGGCCGGAGACGAACTCACCAAGCTGGGCGAGGAGGATGAG
CAGGGCTGGTGCCGTGGGCGGCTGGACAGCGGGCAGCTGGGCCTCTACCCTGCCAACTACGTGGAGGCTA
TCTAG

Translation (444 aa):
MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQL
IEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFR
KAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYE
KVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADA
QEDLRWFRSTSGPGMPMNWPQFEEWNPDLPHTTTKKEKQPKKAEGVALTNATGAVESTSQAGDRGSVSSY
DRGQPYATEWSDDESGNPFGGSETNGGANPFEDDSKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDE
QGWCRGRLDSGQLGLYPANYVEAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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