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Report for CCDS42901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42901.1 Public Homo sapiens 20 SLC17A9 24 110 108 CCDS HistoryNCBI Gene:63910Re-query CCDS DB by CCDS ID:42901.1Re-query CCDS DB by GeneID:63910See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370351.9 ENSP00000359376.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370351.9Link to Ensembl Protein Viewer:ENSP00000359376.4Re-query CCDS DB by Nucleotide ID:ENST00000370351Re-query CCDS DB by Protein ID:ENSP00000359376
Original member Current member NCBI NM_022082.4 NP_071365.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022082.4Link to Protein Sequence:NP_071365.4Re-query CCDS DB by Nucleotide ID:NM_022082Re-query CCDS DB by Protein ID:NP_071365Link to BLAST:NP_071365.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071365.4 436 Q9BYT1-1 436 100% 0 0

Chromosomal Locations for CCDS 42901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62952831 62952889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62956765 62956962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62957441 62957580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62960504 62960603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62962624 62962754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62963273 62963369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62963584 62963680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62964228 62964315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62965132 62965166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62965610 62965725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62966525 62966580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62966703 62966732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62967337 62967500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCAGCCACCCCCAGACGAGGCCCGCAGGGACATGGCCGGGGACACCCAGTGGTCCAGGCCCGAGTGCC
AGGCATGGACGGGGACGCTGCTGCTGGGCACATGCCTTCTGTACTGCGCCCGCTCCAGCATGCCCATCTG
CACCGTCTCCATGAGCCAGGACTTCGGCTGGAACAAGAAGGAGGCCGGCATCGTGCTCAGCAGCTTCTTC
TGGGGCTACTGCCTGACACAGGTTGTGGGCGGCCACCTCGGGGATCGGATTGGGGGTGAGAAGGTCATCC
TGCTGTCAGCCTCTGCCTGGGGCTCCATCACGGCCGTCACCCCACTGCTCGCCCACCTGAGCAGTGCCCA
CCTGGCCTTCATGACCTTCTCACGCATCCTCATGGGCTTGCTCCAAGGGGTTTACTTCCCTGCCCTGACC
AGCCTGCTGTCGCAGAAGGTGCGGGAGAGTGAGCGAGCCTTCACCTACAGCATCGTGGGCGCCGGCTCCC
AGTTTGGGACGCTGCTGACCGGGGCGGTGGGCTCCCTGCTCCTGGAATGGTACGGCTGGCAGAGCATCTT
CTATTTCTCCGGCGGCCTCACCTTGCTTTGGGTGTGGTACGTGTACAGGTACCTGCTGAGTGAAAAAGAT
CTCATCCTGGCCTTGGGTGTCCTGGCCCAAAGCCGGCCGGTGTCCAGGCACAACAGAGTCCCCTGGAGAC
GGCTCTTCCGGAAGCCTGCTGTCTGGGCAGCCGTCGTCTCCCAGCTCTCTGCAGCCTGCTCCTTCTTCAT
CCTCCTCTCCTGGCTGCCCACCTTCTTCGAGGAGACCTTCCCCGACGCCAAGGGCTGGATCTTCAACGTG
GTTCCTTGGTTGGTGGCGATTCCGGCCAGTCTATTCAGCGGGTTTCTCTCTGATCATCTCATCAATCAGG
GTTACAGAGCCATCACGGTGCGGAAGCTCATGCAGGGCATGGGCCTTGGCCTCTCCAGCGTCTTTGCTCT
GTGCCTGGGCCACACCTCCAGCTTCTGTGAGTCTGTGGTCTTTGCATCAGCCTCCATCGGCCTCCAGACC
TTCAACCACAGTGGCATTTCTGTTAACATCCAGGACTTGGCCCCGTCCTGCGCCGGCTTTCTGTTTGGTG
TGGCCAACACAGCCGGGGCCTTGGCAGGTGTCGTGGGTGTGTGTCTAGGCGGCTACTTGATGGAGACCAC
GGGCTCCTGGACTTGCCTGTTCAACCTTGTGGCCATCATCAGCAACCTGGGGCTGTGCACCTTCCTGGTG
TTTGGACAGGCTCAGAGGGTGGACCTGAGCTCTACCCATGAGGACCTCTAG

Translation (436 aa):
MQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFF
WGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLAFMTFSRILMGLLQGVYFPALT
SLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLWVWYVYRYLLSEKD
LILALGVLAQSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNV
VPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQT
FNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLV
FGQAQRVDLSSTHEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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