NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44131.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44131.2 Public Homo sapiens 1 CCDC17 24 110 108 CCDS HistoryNCBI Gene:149483Re-query CCDS DB by CCDS ID:44131.2Re-query CCDS DB by GeneID:149483See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 44131.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44131.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528266.6 ENSP00000432172.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000528266.6Link to Ensembl Protein Viewer:ENSP00000432172.1Re-query CCDS DB by Nucleotide ID:ENST00000528266Re-query CCDS DB by Protein ID:ENSP00000432172
Original member Current member NCBI NM_001114938.3 NP_001108410.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114938.3Link to Protein Sequence:NP_001108410.2Re-query CCDS DB by Nucleotide ID:NM_001114938Re-query CCDS DB by Protein ID:NP_001108410Link to BLAST:NP_001108410.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108410.2 622 Q96LX7-4 622 100% 0 0

Chromosomal Locations for CCDS 44131.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45620275 45620433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45620723 45620833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45620903 45621113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621281 45621484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621638 45621735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621877 45621995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622241 45622348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622549 45622667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622751 45622834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622955 45623117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623217 45623439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623557 45623652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623736 45623909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGACTCCCACTCTGGGGAGCCTGCGCTCCTGCCCTGTGGGACCTGTGACATGGTTTTCCGCTCCTCAG
CTCTGTTAGCCACCCATACTCAGCGCTTCTGCATTGGCCACCCGACCCAAGAGATGACATTTGGAGCACA
GGCATCAGTTGCCACTGAACCCCAGCGGGCCGCGGTTGTGCCACAAGAACACCAGGGCGTGCCACAAGAA
CCCCAGGGCCTCCCAGACCAGCAGGCCAGTAGATCTGCTCTAAAGAGGTTAACAGAGGAGGTGCAGTGGC
TGCGGCTATCCCTACAGGAAATGCGGCCCTGGATAACAGAGGTCCCCAGGGTGTTCGCGGGGCCCTGGAC
ACGTTCCGAGGCGCGGCCTCAGAGTCCCATGTCCGAGGCGGTGGGAAGCCCCAGCGAGCGGCTGCGGGCG
CTGTTCAGGACTCGCGCGAGGCGCGTGGCGGAGATGGAAGCGCAGAGCCGGGCCCTGCAGCTACGCGGCG
AGGAACTGAGCCGACGCCTCCAAGTTGTGGCCTGTACGCGGGGCGGGATGTCCCGCCTCTTCGGCCTGGA
GCAGGAGATTCGAGAACTACAAGCTGAGGCCGGGAGGACGCGGGGAGCTCTAGAGGTGTTGGGGGCCCGC
ATTCAGGAGCTGCAGGCGGAGCCAGGGAACCCGCTGAGCTCCCGGCGAGAGGCAGAACTTTATTCTCCAG
TGCAAAAGGCCAACCCGGGAACTCTGGCTGCCGAAATCCGGGCGCTGCGGGAGGCCTACATTCGAGACGG
GGGCCGGGACCCCGGCGTGCTGGGCCAGATATGGCAGTTGCAGGTGGAGGCGTCTGCACTGGAGCTGCAG
CGGTCGCAGACCCGCAGAGGAAGGGCAGGTGCCACCTCAGGGGAGCTTCCAGTAGTGGAGGCTGAAAACC
GGCGCTTGGAGGCAGAAATCTTGGCCTTGCAAATGCAGAGGGGTCGGGCACCCTTGGGGCCCCAGGATCT
GCGACTCCTGGGGGATGCCAGCCTACAACCGAAGGGGAGGAGAGATCCCCCACTCCTCCCGCCACCGGTG
GCACCACCGCTGCCACCACTTCCAGGCTTCTCGGAGCCACAGCTTCCTGGAACAATGACCAGAAACCTGG
GCCTGGACTCACACTTCCTCCTGCCCACATCGGACATGCTGGGCCCTGCACCCTATGATCCTGGGGCTGG
CCTGGTCATTTTCTATGATTTCCTGCGGGGCCTTGAGGCTTCCTGGATTTGGGTGCAACTAAGGACTGGC
TTGGCACGCGATGGACGGGATACAGGAAGGACCACAGCGTTGCCCCCAGCCCTTTGCCTGCCCCCACCTC
CTGCTCCCGGGCCCATGGGCAACTGTGCCATCCTTGCCAGCAGGCAGCCTGTGCCCAGACTACCACCCTC
ATCATCAGTATCTTTGGTCTGTGAGCTGCAGGTCTGGCAGGGGCTAGCATGGGCTAGGGCACCACAGCCA
AAGGCTTGGGTCTCACTTGGACTATTTGACCAAGATCAGCGGGTGCTAAGTGGCCGCTGGCGCCTCCCAC
TTCGGGCCCTTCCTCTGGACCCCAGCCTTAGCCTTGGGCAGCTGAATGGGATTCCTCAGGCAGGTCAGGC
TGAGCTCTTTCTGCGGCTGGTGAATGCAAGAGATGCAGCTGTACAGACACTGGCAGAGATCAATCCAGCA
AGTGTCCATGAGTACCAGTACCCACCTCCGGTGTCCAGCACATCTTCACTGGAAGCCAGCTTCCTCACCC
CCGCAGTTGGCTTTGCTGATCCCCCACCTCGTACAGAAGAGCCCCTCAGTGGAGTCAAGGATAGAGATGA
GGGTTTGGGCCCTCACCACAGTTCTGACTTGCCCCCAGTGAGTTTCTGA

Translation (622 aa):
MDSHSGEPALLPCGTCDMVFRSSALLATHTQRFCIGHPTQEMTFGAQASVATEPQRAAVVPQEHQGVPQE
PQGLPDQQASRSALKRLTEEVQWLRLSLQEMRPWITEVPRVFAGPWTRSEARPQSPMSEAVGSPSERLRA
LFRTRARRVAEMEAQSRALQLRGEELSRRLQVVACTRGGMSRLFGLEQEIRELQAEAGRTRGALEVLGAR
IQELQAEPGNPLSSRREAELYSPVQKANPGTLAAEIRALREAYIRDGGRDPGVLGQIWQLQVEASALELQ
RSQTRRGRAGATSGELPVVEAENRRLEAEILALQMQRGRAPLGPQDLRLLGDASLQPKGRRDPPLLPPPV
APPLPPLPGFSEPQLPGTMTRNLGLDSHFLLPTSDMLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLRTG
LARDGRDTGRTTALPPALCLPPPPAPGPMGNCAILASRQPVPRLPPSSSVSLVCELQVWQGLAWARAPQP
KAWVSLGLFDQDQRVLSGRWRLPLRALPLDPSLSLGQLNGIPQAGQAELFLRLVNARDAAVQTLAEINPA
SVHEYQYPPPVSSTSSLEASFLTPAVGFADPPPRTEEPLSGVKDRDEGLGPHHSSDLPPVSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH