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Report for CCDS13345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13345.1 Public Homo sapiens 20 SEMG1 24 110 108 CCDS HistoryNCBI Gene:6406Re-query CCDS DB by CCDS ID:13345.1Re-query CCDS DB by GeneID:6406See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372781.4 ENSP00000361867.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372781.4Link to Ensembl Protein Viewer:ENSP00000361867.3Re-query CCDS DB by Nucleotide ID:ENST00000372781Re-query CCDS DB by Protein ID:ENSP00000361867
Original member Current member NCBI NM_003007.5 NP_002998.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003007.5Link to Protein Sequence:NP_002998.1Re-query CCDS DB by Nucleotide ID:NM_003007Re-query CCDS DB by Protein ID:NP_002998Link to BLAST:NP_002998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002998.1 462 P04279-1 462 100% 0 0

Chromosomal Locations for CCDS 13345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45207054 45207129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45207374 45208686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGAAGCCCAACATCATCTTTGTACTTTCCCTGCTCCTCATCTTGGAGAAGCAAGCAGCTGTGATGGGAC
AAAAAGGTGGATCAAAAGGCCGATTACCAAGTGAATTTTCCCAATTTCCACACGGACAAAAGGGCCAGCA
CTATTCTGGACAAAAAGGCAAGCAACAAACTGAATCCAAAGGCAGTTTTTCTATTCAATACACATATCAT
GTAGATGCCAATGATCATGACCAGTCCCGAAAAAGTCAGCAATATGATTTGAATGCCCTACATAAGACGA
CAAAATCACAACGACATCTAGGTGGAAGTCAACAACTGCTCCATAATAAACAAGAAGGCAGAGACCATGA
TAAATCAAAAGGTCATTTTCACAGGGTAGTTATACACCATAAAGGAGGCAAAGCTCATCGTGGGACACAA
AATCCTTCTCAAGATCAGGGGAATAGCCCATCTGGAAAGGGAATATCCAGTCAATATTCAAACACAGAAG
AAAGGCTGTGGGTTCATGGACTAAGTAAAGAACAAACTTCCGTCTCTGGTGCACAAAAAGGTAGAAAACA
AGGCGGATCCCAAAGCAGTTATGTTCTCCAAACTGAAGAGCTAGTAGCTAACAAACAACAACGTGAGACT
AAAAATTCTCATCAAAATAAAGGGCATTACCAAAATGTGGTTGAAGTGAGAGAGGAACATTCAAGTAAAG
TACAAACCTCACTCTGTCCTGCGCACCAAGACAAACTCCAACATGGATCCAAAGACATTTTTTCTACCCA
AGATGAGCTCCTAGTATATAACAAGAATCAACACCAGACAAAAAATCTCAATCAAGATCAACAGCATGGC
CGAAAGGCAAATAAAATATCATACCAATCTTCAAGTACAGAAGAAAGACGACTCCACTATGGAGAAAATG
GTGTGCAGAAAGATGTATCCCAAAGCAGTATTTATAGCCAAACTGAAGAGAAAGCACAGGGCAAGTCTCA
AAAACAGATAACAATTCCCAGTCAAGAGCAAGAGCATAGCCAAAAGGCAAATAAAATATCATACCAATCT
TCAAGTACGGAAGAAAGACGACTCCACTATGGAGAAAATGGTGTGCAGAAAGATGTATCCCAACGCAGTA
TTTATAGCCAAACTGAAAAGCTAGTAGCAGGCAAGTCTCAAATCCAGGCACCAAATCCTAAGCAAGAGCC
ATGGCATGGTGAAAATGCAAAAGGAGAGTCTGGCCAATCTACAAATAGAGAACAAGACCTACTCAGTCAT
GAACAAAAAGGCAGACACCAACATGGATCTCATGGGGGATTGGATATTGTAATTATAGAGCAGGAAGATG
ACAGTGATCGTCATTTGGCACAACATCTTAACAACGACCGAAACCCATTATTTACATAA

Translation (462 aa):
MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESKGSFSIQYTYH
VDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSKGHFHRVVIHHKGGKAHRGTQ
NPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSGAQKGRKQGGSQSSYVLQTEELVANKQQRET
KNSHQNKGHYQNVVEVREEHSSKVQTSLCPAHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHG
RKANKISYQSSSTEERRLHYGENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKISYQS
SSTEERRLHYGENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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