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Report for CCDS8117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8117.1 Public Homo sapiens 11 CTSW 24 110 108 CCDS HistoryNCBI Gene:1521Re-query CCDS DB by CCDS ID:8117.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307886.8 ENSP00000311300.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307886.8Link to Ensembl Protein Viewer:ENSP00000311300.3Re-query CCDS DB by Nucleotide ID:ENST00000307886Re-query CCDS DB by Protein ID:ENSP00000311300
Original member Current member NCBI NM_001335.4 NP_001326.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001335.4Link to Protein Sequence:NP_001326.3Re-query CCDS DB by Nucleotide ID:NM_001335Re-query CCDS DB by Protein ID:NP_001326Link to BLAST:NP_001326.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001326.3 376 P56202 376 100% 0 0

Chromosomal Locations for CCDS 8117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65879855 65879941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65880202 65880286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65881407 65881520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65882175 65882329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65882430 65882526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65882609 65882689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65882779 65882904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65883069 65883133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65883215 65883424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65883508 65883618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGCACTGACTGCCCACCCCTCCTGCCTCCTGGCCCTGTTGGTGGCAGGCCTAGCCCAAGGCATCAGAG
GCCCCCTTAGGGCCCAGGACCTAGGTCCCCAGCCGCTAGAGCTGAAAGAGGCCTTCAAGTTGTTCCAGAT
CCAGTTCAACCGGAGTTACCTGAGCCCAGAAGAGCATGCTCACCGCCTGGACATCTTTGCCCACAACCTG
GCCCAGGCTCAGAGGCTGCAGGAGGAGGACTTGGGCACAGCTGAGTTTGGGGTGACTCCATTCAGTGACC
TCACAGAGGAGGAGTTTGGCCAGCTCTATGGCTATCGGAGGGCAGCTGGAGGGGTCCCCAGCATGGGCAG
AGAAATAAGGTCTGAAGAGCCAGAGGAGTCAGTACCTTTCAGCTGTGACTGGCGGAAGGTGGCCAGCGCC
ATCTCACCCATCAAGGACCAGAAAAACTGCAACTGCTGCTGGGCCATGGCAGCGGCAGGCAACATAGAGA
CCCTGTGGCGCATCAGTTTCTGGGATTTTGTGGATGTCTCCGTGCAGGAACTGCTGGACTGTGGCCGCTG
TGGGGATGGCTGCCACGGTGGCTTCGTCTGGGACGCGTTCATAACTGTCCTCAACAACAGCGGCCTGGCC
AGTGAAAAGGACTACCCGTTCCAGGGCAAAGTCAGAGCCCACAGGTGCCACCCCAAGAAGTACCAGAAGG
TGGCCTGGATCCAGGACTTCATCATGCTGCAGAACAACGAGCACAGAATTGCGCAGTACCTGGCCACTTA
TGGCCCCATCACCGTGACCATCAACATGAAGCCCCTTCAGCTATACCGGAAAGGTGTGATCAAGGCCACA
CCCACCACCTGTGACCCCCAGCTTGTGGACCACTCTGTCCTGCTGGTGGGTTTTGGCAGCGTCAAGTCAG
AGGAGGGGATATGGGCAGAGACAGTCTCATCGCAGTCTCAGCCTCAGCCTCCACACCCCACCCCATACTG
GATCCTGAAGAACTCCTGGGGGGCCCAATGGGGAGAGAAGGGCTATTTCCGGCTGCACCGAGGGAGCAAT
ACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCGTGTGCAGAAACCGGATATGAAGCCCCGAGTCTCCT
GCCCTCCCTGA

Translation (376 aa):
MALTAHPSCLLALLVAGLAQGIRGPLRAQDLGPQPLELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNL
AQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASA
ISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRCGDGCHGGFVWDAFITVLNNSGLA
SEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKAT
PTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSN
TCGITKFPLTARVQKPDMKPRVSCPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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