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Report for CCDS2973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2973.1 Public Homo sapiens 3 SPICE1 24 110 108 CCDS HistoryNCBI Gene:152185Re-query CCDS DB by CCDS ID:2973.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2973.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295872.8 ENSP00000295872.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295872.8Link to Ensembl Protein Viewer:ENSP00000295872.4Re-query CCDS DB by Nucleotide ID:ENST00000295872Re-query CCDS DB by Protein ID:ENSP00000295872
Original member Current member EBI ENST00000649772.1 ENSP00000497606.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649772.1Link to Ensembl Protein Viewer:ENSP00000497606.1Re-query CCDS DB by Nucleotide ID:ENST00000649772Re-query CCDS DB by Protein ID:ENSP00000497606
Original member Current member NCBI NM_001331078.2 NP_001318007.1 Accepted alive Link to Nucleotide Sequence:NM_001331078.2Link to Protein Sequence:NP_001318007.1Re-query CCDS DB by Nucleotide ID:NM_001331078Re-query CCDS DB by Protein ID:NP_001318007Link to BLAST:NP_001318007.1
Original member Current member NCBI NM_001331079.2 NP_001318008.2 Accepted alive Link to Nucleotide Sequence:NM_001331079.2Link to Protein Sequence:NP_001318008.2Re-query CCDS DB by Nucleotide ID:NM_001331079Re-query CCDS DB by Protein ID:NP_001318008Link to BLAST:NP_001318008.2
Original member Current member NCBI NM_001387939.1 NP_001374868.1 Accepted alive Link to Nucleotide Sequence:NM_001387939.1Link to Protein Sequence:NP_001374868.1Re-query CCDS DB by Nucleotide ID:NM_001387939Re-query CCDS DB by Protein ID:NP_001374868Link to BLAST:NP_001374868.1
Original member Current member NCBI NM_144718.4 NP_653319.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144718.4Link to Protein Sequence:NP_653319.1Re-query CCDS DB by Nucleotide ID:NM_144718Re-query CCDS DB by Protein ID:NP_653319Link to BLAST:NP_653319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318007.1 855 Q8N0Z3 855 100% 0 0
NP_001318008.2 855 Q8N0Z3 855 100% 0 0
NP_001374868.1 855 Q8N0Z3 855 100% 0 0
NP_653319.1 855 Q8N0Z3 855 100% 0 0

Chromosomal Locations for CCDS 2973.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113445307 113445360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113446589 113446676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113448038 113448140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113450336 113450516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113453466 113453950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113457136 113457357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113460617 113460764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113465653 113465784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113468139 113468404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113468762 113468899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113469099 113469238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113488945 113489063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113493206 113493312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113494049 113494142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113499439 113499582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113503180 113503227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113506507 113506605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGTCATTTGTCAGAGTGAACCGCTGTGGTCCCCGAGTTGGTGTAAGAAAGACACCGAAAGTAAAGAAGA
AGAAAACTTCAGTGAAACAAGAATGGGATAATACCGTGACTGATCTAACCGTTCATCGGGCAACTCCCGA
AGATCTGGTACGCCGTCATGAAATACACAAATCGAAGAATAGAGCATTAGTACACTGGGAACTCCAAGAA
AAAGCTTTGAAGAGAAAATGGAGGAAGCAGAAACCAGAAACTTTAAATCTTGAGAAAAGAAGATTGTCTA
TCATGAAGGAGATTCTTTCTGATCAATACCAGATGCAAGATGTGTTGGAGAAATCTGATCATCTAATAGC
TGCAGCAAAAGAGCTGTTTCCTCGTAGGCGCACAGGGTTTCCAAATGTAACAGTGGCTCCTGATTCCTCT
CAGGGTCCCATTGTGGTAAATCAAGACCCTATCACCCAATCTATCTTTAATGAGTCTGTCATAGAACCTC
AGGCTCTTAATGATGTAGATGGTGAAGAAGAAGGAACTGTTAATAGCCAGTCAGGAGAAAGTGAGAATGA
GAATGAGTTGGATAACTCTCTAAACTCTCAGTCTAACACGAATACAGACAGGTTTCTCCAACAACTAACA
GAAGAGAATTTTGAGTTAATTAGTAAGTTGTGGACTGACATTCAGCAGAAAATAGCAACCCAGTCACAAA
TAACTCCTCCAGGAACGCCATCATCTGCTCTTTCATCAGGGGAGCAAAGAGCTGCTCTGAATGCTACCAA
TGCTGTCAAGAGACTCCAAACCAGGCTTCAGCCTGAAGAATCTACTGAGACTCTAGACTCAAGCTACGTT
GTGGGACACGTGCTGAACTCAAGGAAGCAAAAACAGCTGTTAAATAAAGTGAAAAGGAAACCGAATTTGC
ATGCTCTTTCCAAGCCGAAGAAAAACATATCATCAGGTAGCACAACCTCTGCAGACTTACCAAATAGGAC
TAATTCCAACCTGGATGTCCTCAAACACATGATACATGAAGTGGAACATGAAATGGAAGAATATGAGCGG
TGGACAGGTCGCGAGGTCAAGGGTCTGCAGAGCAGTCAGGGTCTTACAGGCTTCACTTTGTCGCTGGTGA
GCTCCCTCTGTCGCCTGGTTCGGTACCTTAAAGAGAGTGAGATCCAGCTACGTAAAGAAGTAGAGACAAG
GCAACAACTGGAACAAGTATTAGGTGATCATCGAGAGCTCATTGATGCTCTGACAGCTGAAATTCTTCGT
CTTAGAGAAGAAAACGCTGCTACACAGGCAAGACTTCAGCAGTACATGGTCACAACAGATGAGCAACTGA
TATCACTCACACATGCTATTAAGAACTGTCCTGTGATAAATAACAGACAAGAAATTCAGGCATCAGAAAG
CGGAGCCACAGGTAGAAGAGTTATGGACAGTCCAGAGCGTCCAGTTGTAAATGCCAATGTCTCAGTGCCA
TTGATGTTCAGAGAGGAAGTGGCTGAATTCCCACAGGAAGAGTTGCCCGTTAAACTGTCTCAGGTGCCAG
ACCCTCCAGATAACATGAATCTGGCCAAGAATTTTCCAGCACATATTTTTGAGCCAGCTGTGTTGTTAAC
ACCACCCAGGCAGAAGAGCAACTTAAAATTCTCTCCTCTTCAGGACGTATTGAGAAGGACTGTTCAAACT
CGTCCTGCTCCACGACTTCCTCCAACTGTGGAAATAATTGAGAAGGAACAAAATTGGGAAGAGAAGACCT
TACCTATTGATACAGACATTCAGAATTCAAGTGAAGAGAATCGTCTCTTCACTCAGAGATGGAGAGTCTC
TCACATGGGAGAAGATTTGGAGAACAAAACTCAGGCTCCTTTTGTTAACCTCTCACAGCCCCTCTGCAAT
TCCCATTCCAACACTCAACAGTCAAGAAGCCCCACATTCTCAGAAGAGCTCCCAGTACTGGGAGATGGGC
AGCAGCTGAGAACAAATGAGTCATTAATACAAAGAAAGGACATAATGACACGAATTGCTGATTTGACATT
GCAGAATTCAGCTATCAAGGCACATATGAATAATATTATTGAGCCCAGAGGAGAGCAAGGGGATGGACTC
CGGGAGTTGAACAAACAAGAAAGTGCAAGTGACATGACTTCTACTTTTCCAGTAGCACAGTCTCTAACAC
CAGGTAGTATGGAGGAACGGATTGCAGAATTGAATCGACAAAGTATGGAGGCTCGTGGAAAACTACTGCA
GTTGATAGAGCAGCAGAAACTTGTTGGTTTGAATCTTTCTCCACCAATGTCACCTGTTCAGTTACCTCTC
AGAGCATGGACTGAAGGAGCAAAGAGGACAATTGAGGTATCTATTCCAGGAGCAGAAGCCCCAGAAAGCT
CAAAATGTAGTACTGTCTCTCCCGTCAGCGGGATAAATACAAGAAGATCTTCCGGGGCTACTGGTAATTC
TTGTTCTCCACTAAATGCCACCTCAGGAAGTGGGAGATTCACACCTCTTAATCCAAGAGCAAAGATTGAG
AAACAGAATGAAGAAGGCTGGTTTGCTCTTTCTACCCATGTATCATAA

Translation (855 aa):
MSFVRVNRCGPRVGVRKTPKVKKKKTSVKQEWDNTVTDLTVHRATPEDLVRRHEIHKSKNRALVHWELQE
KALKRKWRKQKPETLNLEKRRLSIMKEILSDQYQMQDVLEKSDHLIAAAKELFPRRRTGFPNVTVAPDSS
QGPIVVNQDPITQSIFNESVIEPQALNDVDGEEEGTVNSQSGESENENELDNSLNSQSNTNTDRFLQQLT
EENFELISKLWTDIQQKIATQSQITPPGTPSSALSSGEQRAALNATNAVKRLQTRLQPEESTETLDSSYV
VGHVLNSRKQKQLLNKVKRKPNLHALSKPKKNISSGSTTSADLPNRTNSNLDVLKHMIHEVEHEMEEYER
WTGREVKGLQSSQGLTGFTLSLVSSLCRLVRYLKESEIQLRKEVETRQQLEQVLGDHRELIDALTAEILR
LREENAATQARLQQYMVTTDEQLISLTHAIKNCPVINNRQEIQASESGATGRRVMDSPERPVVNANVSVP
LMFREEVAEFPQEELPVKLSQVPDPPDNMNLAKNFPAHIFEPAVLLTPPRQKSNLKFSPLQDVLRRTVQT
RPAPRLPPTVEIIEKEQNWEEKTLPIDTDIQNSSEENRLFTQRWRVSHMGEDLENKTQAPFVNLSQPLCN
SHSNTQQSRSPTFSEELPVLGDGQQLRTNESLIQRKDIMTRIADLTLQNSAIKAHMNNIIEPRGEQGDGL
RELNKQESASDMTSTFPVAQSLTPGSMEERIAELNRQSMEARGKLLQLIEQQKLVGLNLSPPMSPVQLPL
RAWTEGAKRTIEVSIPGAEAPESSKCSTVSPVSGINTRRSSGATGNSCSPLNATSGSGRFTPLNPRAKIE
KQNEEGWFALSTHVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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