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Report for CCDS3402.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3402.2 Public Homo sapiens 4 TRMT44 24 110 108 CCDS HistoryNCBI Gene:152992Re-query CCDS DB by CCDS ID:3402.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 3402.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. There are no human full-length transcripts representing this exon combination, but it is supported by the tiled ESTs BX395637.2, BX371487.2, BX348769.2 and BX395636.2 from the same clone, which were used to construct Genoscope accession CR604280.1. The updated N-terminus is also supported by homologous mouse transcripts.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3402.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389737.5 ENSP00000374387.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389737.5Link to Ensembl Protein Viewer:ENSP00000374387.4Re-query CCDS DB by Nucleotide ID:ENST00000389737Re-query CCDS DB by Protein ID:ENSP00000374387
Original member Current member NCBI NM_152544.3 NP_689757.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152544.3Link to Protein Sequence:NP_689757.2Re-query CCDS DB by Nucleotide ID:NM_152544Re-query CCDS DB by Protein ID:NP_689757Link to BLAST:NP_689757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689757.2 757 Q8IYL2-1 757 100% 0 0

Chromosomal Locations for CCDS 3402.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8440823 8441441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8446476 8446590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8449669 8449888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8451960 8452028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8452882 8452989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8454742 8454813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8463985 8464091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8465378 8465561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8467914 8468346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8471084 8471200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8475772 8476001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGCTGAGGTGGGCCGTACCGGGATCAGCTACCCAGGCGCGCTTCTCCCACAGGGCTTCTGGGCTGCGG
TC
GAAGTGTGGCTGGAGAGGCCGCAGGTGGCAAACAAACGGCTTTGCGGCGCCCGCCTGGAGGCCCGCTG
G
AGCGCCGCCCTGCCCTGCGCGGAGGCCCGCGGCCCCGGGACTAGCGCAGGCTCGGAGCAGAAGGAGCGG
GGT
CCGGGACCCGGCCAGGGTTCCCCCGGAGGGGGCCCGGGTCCCAGGTCGCTATCAGGACCCGAGCAGG
GC
ACGGCATGTTGCGAACTTGAGGAGGCCCAGGGCCAGTGCCAGCAAGAGGAGGCACAGAGGGAAGCCGC
C
TCAGTGCCCCTGAGGGACTCCGGGCACCCCGGCCATGCTGAAGGAAGGGAGGGCGACTTCCCCGCCGCA
GAT
CTGGATTCGCTTTGGGAGGATTTCTCCCAAAGTCTCGCCCGTGGCAATTCGGAGTTGCTGGCCTTCC
TC
ACCAGCTCCGGGGCGGGATCGCAGCCAGAGGCGCAGCGTGAGCTCGACGTGGTTCTCAGAACCGTCAT
C
CCGAAAACTAGCCCACATTGCCCCCTTACAACTCCCAGGAGGGAAATAGTCGTGCAAGATGTCCTCAAT
GGA
ACCATAACGTTTTTGCCTTTGGAAGAAGATGATGAGGGGAACCTAAAGGTTAAGATGAGCAATGTGT
AT
CAAATTCAGCTCAGTCATAGCAAAGAAGAATGGTTCATATCTGTTTTAATTTTCTGTCCAGAAAGATG
G
CATTCAGATGGAATCGTGTATCCCAAACCCACGTGGCTTGGAGAAGAGTTGCTGGCCAAGTTGGCCAAG
TGG
TCTGTAGAGAACAAGAAGAGTGACTTTAAAAGCACCCTTTCCCTCATCTCCATTATGAAGTATAGCA
AG
GCTTACCAGGAACTTAAAGAGAAGTATAAGGAAATGGTTAAGGTGTGGCCTGAAGTCACTGATCCTGA
G
AAGTTCGTGTATGAAGATGTGGCTATCGCAGCATACCTGCTGATTCTATGGGAAGAAGAAAGGGCTGAG
AGG
AGACTAACTGCCAGGCAGTCCTTTGTGGACCTGGGATGTGGAAATGGCCTCCTGGTCCACATCCTGA
GC
AGTGAGGGGCATCCAGGCAGAGGGATTGATGTCCGAAGAAGAAAAATCTGGGACATGTATGGACCACA
A
ACTCAGTTAGAGGAAGATGCAATCACACCCAATGATAAGACCCTTTTCCCTGATGTTGATTGGTTAATC
GGT
AACCATTCTGATGAACTCACACCATGGATACCTGTCATTGCAGCCAGGTCTTCCTACAATTGCCGCT
TC
TTTGTCCTCCCCTGCTGCTTCTTTGACTTCATTGGAAGATACTCCCGGAGGCAGAGTAAGAAGACTCA
G
TACCGGGAATACCTTGACTTCATTAAAGAAGTGGGCTTCACCTGTGGGTTTCACGTGGACGAAGACTGC
CTC
AGGATTCCTTCAACCAAAAGAGTCTGTCTCGTTGGAAAATCCAGAACATACCCTTCCTCCAGAGAAG
CT
TCCGTGGATGAAAAGAGGACTCAGTACATTAAGAGCAGGCGGGGCTGCCCTGTAAGCCCACCTGGCTG
G
GAGCTTTCCCCTTCTCCACGCTGGGTTGCTGCTGGCAGTGCTGGTCACTGTGACGGTCAGCAAGCTCTG
GAC
GCCAGGGTCGGGTGTGTAACCAGGGCCTGGGCCGCTGAGCATGGAGCAGGGCCCCAGGCTGAAGGAC
CC
TGGCTACCTGGATTTCATCCCAGAGAAAAGGCTGAGCGTGTGAGGAACTGTGCCGCCCTGCCACGAGA
T
TTTATTGACCAAGTGGTTTTGCAAGTAGCGAATTTACTGTTAGGTGGAAAGCAATTAAACACAAGAAGT
TCT
CGAAATGGGAGTTTGAAGACCTGGAATGGGGGAGAGAGCCTATCTCTGGCAGAAGTAGCCAACGAGC
TG
GACACGGAGACCCTGCGGAGGCTGAAGCGGGAGTGTGGGGGCCTGCAGACGCTGCTCCGGAACAGCCA
C
CAGGTGTTCCAAGTTGTGAATGGGAGAGTTCACATCCGCGACTGGCGAGAGGAGACACTGTGGAAGACA
AAG
CAACCGGAAGCGAAACAGAGACTGCTCTCTGAAGCCTGCAAAACCCGCCTCTGCTGGTTCTTCATGC
AT
CACCCTGATGGCTGCGCTCTGTCCACGGACTGCTGCCCGTTTGCCCATGGGCCTGCGGAGCTGCGGCC
A
CCCCGGACCACCCCGAGGAAGAAGATTTCATGA


Translation (757 aa):
MAEVGRTGISYPGALLPQGFWAAVEVWLERPQVANKRLCGARLEARWSAALPCAEARGPGTSAGSEQKER
G
PGPGQGSPGGGPGPRSLSGPEQGTACCELEEAQGQCQQEEAQREAASVPLRDSGHPGHAEGREGDFPAA
D
LDSLWEDFSQSLARGNSELLAFLTSSGAGSQPEAQRELDVVLRTVIPKTSPHCPLTTPRREIVVQ
DVLN
G
TITFLPLEEDDEGNLKVKMSNVYQIQLSHSKEE
WFISVLIFCPERWHSDGIVYPKPTWLGEELLAKLAK
W
SVENKKSDFKSTLSLISIMKYSKAYQELKEKYKEMVK
VWPEVTDPEKFVYEDVAIAAYLLILWEEERAE
R
RLTARQSFVDLGCGNGLLVHILSSEG
HPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLI
G
NHSDELTPWIPVIAA
RSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDC
L
RIPSTKR
VCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPSPRWVAAGSAGHCDGQQAL
D
ARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCAALPRDFIDQVVLQVANLLLGGKQLNTRS
S
RNGSLKTWNGG
ESLSLAEVANELDTETLRRLKRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKT
K
QPEAKQRLLSEACKTRLCWFFMHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS




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