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Report for CCDS41711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41711.1 Public Homo sapiens 11 POGLUT3 24 110 108 CCDS HistoryNCBI Gene:143888Re-query CCDS DB by CCDS ID:41711.1Re-query CCDS DB by GeneID:143888See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41711.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323468.10 ENSP00000315386.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323468.10Link to Ensembl Protein Viewer:ENSP00000315386.5Re-query CCDS DB by Nucleotide ID:ENST00000323468Re-query CCDS DB by Protein ID:ENSP00000315386
Original member Current member NCBI NM_153705.5 NP_714916.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153705.5Link to Protein Sequence:NP_714916.3Re-query CCDS DB by Nucleotide ID:NM_153705Re-query CCDS DB by Protein ID:NP_714916Link to BLAST:NP_714916.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714916.3 507 Q7Z4H8-1 507 100% 0 0

Chromosomal Locations for CCDS 41711.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108474827 108474952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108477607 108477711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108479301 108479495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108481180 108481376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108482006 108482222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108486157 108486440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108490970 108491167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108498165 108498366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGCGCCGCCTCCCGCGGGCCCTGCTGCTGCAGCTGCGCCTCGCCCTGCTGGTGGCCGCGGGGGCCCCGG
AG
GTGCTGGTCAGCGCGCCGCGGAGCCTGGTGTGGGGGCCCGGGCTGCAGGCGGCCGTCGTCCTGCCGGT
C
CGCTATTTCTACCTGCAGGCGGTCAACTCGGAGGGCCAGAACCTCACTCGCTCTCCCGCAGGTGAAACA
CCA
TTCAAAGTCGTAGTCAAATCTCTTTCACCTAAAGAGTTGGTCCGGATACATGTCCCTAAACCTTTGG
AC
AGGAATGATGGAACATTTTTGATGAGATATAGGATGTATGAAACTGTCGATGAAGGCCTGAAGATAGA
G
GTCCTTTATGGTGATGAACATGTGGCTCAGTCTCCCTATATTTTGAAAGGACCAGTGTACCATGAGTAC
TGT
GAGTGTCCGGAAGATCCTCAGGCCTGGCAGAAGACTCTTTCTTGTCCAACCAAGGAACCACAGATTG
CA
AAAGATTTTGCTTCCTTTCCCAGCATCAATCTCCAGCAAATGCTAAAAGAAGTCCCCAAAAGGTTTGG
G
GATGAGAGAGGTGCCATTGTTCATTACACGATTCTCAATAACCATGTTTACCGGAGATCTTTAGGGAAA
TAC
ACAGACTTCAAGATGTTCTCTGATGAGATTTTGTTATCATTGACAAGAAAGGTCCTTCTCCCAGATT
TA
GAATTTTATGTTAATCTTGGAGATTGGCCCTTGGAGCATCGAAAAGTCAATGGAACCCCTAGCCCCAT
A
CCTATCATTTCATGGTGTGGCTCTCTGGATTCAAGAGATGTTGTCCTTCCAACGTATGACATCACCCAC
TCC
ATGCTTGAAGCCATGCGGGGTGTTACAAATGATCTCCTCTCTATTCAGGGAAATACAGGGCCTTCCT
GG
ATCAATAAAACAGAGAGAGCTTTCTTCAGAGGTAGAGACAGCCGAGAGGAGAGGCTCCAGTTGGTACA
G
CTGTCCAAAGAAAATCCTCAGCTACTAGATGCAGGAATTACAGGATATTTCTTTTTCCAAGAGAAAGAA
AAG
GAGCTTGGAAAAGCCAAGTTGATGGGTTTCTTTGATTTCTTTAAGTACAAGTATCAAGTAAATGTGG
AT
GGGACCGTGGCTGCTTACAGATATCCATATCTCATGCTGGGCGACAGTCTGGTTTTAAAGCAGGACTC
G
CCATATTATGAACATTTCTACATGGCACTAGAACCTTGGAAGCATTATGTTCCAATTAAAAGAAATCTG
AGT
GATTTATTAGAGAAAGTTAAATGGGCTAAGGAAAATGATGAAGAAGCCAAGAAGATTGCAAAAGAAG
GA
CAGTTGATGGCTAGGGACCTACTACAGCCACACAGGCTTTACTGCTACTATTACCAAGTACTGCAGAA
A
TATGCCGAGCGCCAGTCCAGCAAACCCGAAGTACGTGATGGAATGGAACTTGTTCCTCAGCCAGAAGAT
AGC
ACAGCCATCTGCCAGTGCCACAGGAAAAAGCCTTCAAGAGAAGAACTTTGA


Translation (507 aa):
MRRLPRALLLQLRLALLVAAGAPEVLVSAPRSLVWGPGLQAAVVLPVRYFYLQAVNSEGQNLTRSPAGET
P
FKVVVKSLSPKELVRIHVPKPLDRNDGTFLMRYRMYETVDEGLKIEVLYGDEHVAQSPYILK
GPVYHEY
C
ECPEDPQAWQKTLSCPTKEPQIAKDFASFPSINLQQMLKEVPKRFGDERGAIVHYTILNNHVYRRSLGK
Y
TDFKMFSDEILLSLTRK
VLLPDLEFYVNLGDWPLEHRKVNGTPSPIPIISWCGSLDSRDVVLPTYDITH
S
MLEAMRGVTNDLLSIQGNT
GPSWINKTERAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKE
K
ELGKAKLMGFFDFFK
YKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALEPWKHYVPIKRNL
S
DLLEKVKWAK
ENDEEAKKIAKEGQLMARDLLQPHRLYCYYYQVLQKYAERQSSKPEVRDGMELVPQPED
S
TAICQCHRKKPSREEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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