NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5466.1 Public Homo sapiens 7 C7orf25 24 110 108 CCDS HistoryNCBI Gene:79020Re-query CCDS DB by CCDS ID:5466.1Re-query CCDS DB by GeneID:79020See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5466.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350427.5 ENSP00000343364.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350427.5Link to Ensembl Protein Viewer:ENSP00000343364.4Re-query CCDS DB by Nucleotide ID:ENST00000350427Re-query CCDS DB by Protein ID:ENSP00000343364
Original member Current member EBI ENST00000438029.1 ENSP00000396597.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438029.1Link to Ensembl Protein Viewer:ENSP00000396597.1Re-query CCDS DB by Nucleotide ID:ENST00000438029Re-query CCDS DB by Protein ID:ENSP00000396597
Original member Current member NCBI NM_001099858.2 NP_001093328.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099858.2Link to Protein Sequence:NP_001093328.2Re-query CCDS DB by Nucleotide ID:NM_001099858Re-query CCDS DB by Protein ID:NP_001093328Link to BLAST:NP_001093328.2
Original member Current member NCBI NM_001363436.1 NP_001350365.1 Accepted alive Link to Nucleotide Sequence:NM_001363436.1Link to Protein Sequence:NP_001350365.1Re-query CCDS DB by Nucleotide ID:NM_001363436Re-query CCDS DB by Protein ID:NP_001350365Link to BLAST:NP_001350365.1
Original member Current member NCBI NM_024054.3 NP_076959.2 Accepted alive Link to Nucleotide Sequence:NM_024054.3Link to Protein Sequence:NP_076959.2Re-query CCDS DB by Nucleotide ID:NM_024054Re-query CCDS DB by Protein ID:NP_076959Link to BLAST:NP_076959.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093328.2 421 Q9BPX7-1 421 100% 0 0
NP_001350365.1 421 Q9BPX7-1 421 100% 0 0
NP_076959.2 421 Q9BPX7-1 421 100% 0 0

Chromosomal Locations for CCDS 5466.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 42909635 42910900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGTCTGCACATTCCATGCTCTGTGAACGAATCGCCATAGCCAAGGAACTGATCAAGAGAGCAGAATCAC
TTTCTAGATCAAGAAAAGGTGGCATAGAAGGTGGTGCAAAGCTGTGCAGCAAATTGAAGGCAGAATTAAA
ATTCTTGCAGAAAGTAGAAGCTGGGAAAGTAGCTATTAAAGAGTCTCATTTACAGAGCACTAACCTAACA
CACCTGAGAGCCATTGTGGAATCAGCAGAAAACCTGGAAGAAGTTGTTAGTGTTCTTCATGTCTTTGGTT
ATACAGATACCTTAGGAGAAAAGCAAACCCTTGTGGTAGATGTAGTTGCAAATGGTGGTCATACTTGGGT
GAAAGCCATTGGCCGGAAGGCTGAAGCTCTTCATAACATCTGGCTGGGCAGGGGCCAATATGGTGACAAA
AGCATCATTGAGCAGGCTGAAGACTTCCTCCAGGCCAGTCACCAGCAGCCAGTGCAGTATAGCAACCCTC
ACATCATCTTTGCATTTTACAACAGTGTCTCCAGCCCCATGGCAGAGAAGCTGAAAGAAATGGGCATATC
TGTGAGAGGAGACATAGTAGCAGTCAACGCTCTGTTAGATCACCCTGAAGAGCTTCAACCAAGTGAGAGT
GAATCAGATGATGAGGGCCCTGAACTTTTGCAGGTGACCAGAGTTGACCGAGAAAATATACTAGCAAGTG
TTGCGTTTCCAACAGAAATTAAGGTCGATGTGTGCAAAAGAGTAAATCTGGACATTACTACTTTAATCAC
ATATGTATCTGCCCTCAGCTATGGAGGCTGCCACTTTATTTTCAAAGAGAAAGTGCTCACAGAACAAGCA
GAGCAAGAGAGGAAAGAGCAGGTTCTACCTCAGCTGGAGGCCTTTATGAAGGACAAGGAGTTGTTTGCTT
GTGAATCTGCTGTCAAGGACTTTCAGTCTATTTTAGATACCTTAGGAGGACCTGGGGAGAGAGAGAGGGC
CACTGTGTTAATTAAGCGAATTAATGTGGTACCAGACCAGCCTTCTGAGCGTGCCTTGAGACTAGTGGCC
AGTTCAAAAATTAATAGCCGCTCATTAACAATTTTTGGGACGGGAGACACCCTAAAAGCCATCACAATGA
CTGCTAATAGTGGTTTTGTCAGAGCTGCAAACAACCAGGGTGTTAAATTTAGTGTGTTTATCCATCAGCC
CAGAGCACTTACTGAGAGTAAAGAGGCTCTAGCCACCCCCTTACCAAAAGACTACACAACTGACAGTGAA
CACTAA

Translation (421 aa):
MSAHSMLCERIAIAKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKVEAGKVAIKESHLQSTNLT
HLRAIVESAENLEEVVSVLHVFGYTDTLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDK
SIIEQAEDFLQASHQQPVQYSNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNALLDHPEELQPSES
ESDDEGPELLQVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQA
EQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPDQPSERALRLVA
SSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALATPLPKDYTTDSE
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH