NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4502.1 Public Homo sapiens 6 SNRNP48 24 110 108 CCDS HistoryNCBI Gene:154007Re-query CCDS DB by CCDS ID:4502.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342415.6 ENSP00000339834.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342415.6Link to Ensembl Protein Viewer:ENSP00000339834.4Re-query CCDS DB by Nucleotide ID:ENST00000342415Re-query CCDS DB by Protein ID:ENSP00000339834
Original member Current member NCBI NM_152551.4 NP_689764.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152551.4Link to Protein Sequence:NP_689764.3Re-query CCDS DB by Nucleotide ID:NM_152551Re-query CCDS DB by Protein ID:NP_689764Link to BLAST:NP_689764.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689764.3 339 Q6IEG0-1 339 100% 0 0

Chromosomal Locations for CCDS 4502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7590258 7590413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7593734 7593847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7594099 7594159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7595027 7595101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7601336 7601524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7602623 7602744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7605398 7605486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7606031 7606195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7608825 7608873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGAGGGCGAGCCTCCACCTGTGGAGGAGCGGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGA
GCGGCTGCCGGACGTTGGAGGAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCCCGGGGA
AGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTAAATCATCT
TTGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGATGAAATGT
ATAATCCTGAGTTTTTCTATGAAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCA
GATAATTAAACAAGCTAGAACTGCAGTTGGGAAAGACAGTGATTGTTATAATCAAAGAATTTATTCTTCA
TTGCCTGTTGAAGTTCCTTTGAATCACAAACGGTTTGTTTGTGATCTAACTCAAGCTGATCGTCTTGCCC
TCTATGATTTCGTAGTTGAGGAGACAAAGAAAAAGCGCTCTGATTCTCAAATTATTGAAAATGACAGCGA
TCTCTTTGTAGACTTGGCTGCCAAAATCAATCAAGACAATAGTCGAAAAAGTCCAAAATCCTACCTTGAA
ATCCTGGCAGAAGTACGAGATTATAAAAGAAGACGCCAGTCCTATAGAGCCAAGAATGTTCACATAACCA
AGAAATCATATACTGAGGTGATTCGAGATGTGATAAATGTGCACATGGAAGAACTCAGCAATCATTGGCA
AGAAGAGCAAGAGAAGGCAGAGGATGATGCCGAAAAGAATGAAGAAAGGCGATCAGCTTCAGTAGATTCA
CGGCAGTCTGGTGGAAGCTATTTGGATGCTGAGTGTTCACGACATAGAAGGGATAGGAGTAGAAGCCCAC
ATAAAAGAAAAAGAAACAAAGATAAGGATAAAAACTGTGAGTCGAGAAGAAGGAAAGAGAGGGATGGGGA
AAGACACCATAGTCATAAAAGAAGAAAGCAAAAAATATAA

Translation (339 aa):
MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPYDSNHHMPKSS
LAKHMASCRLRKMGYTKEEEDEMYNPEFFYENVKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIYSS
LPVEVPLNHKRFVCDLTQADRLALYDFVVEETKKKRSDSQIIENDSDLFVDLAAKINQDNSRKSPKSYLE
ILAEVRDYKRRRQSYRAKNVHITKKSYTEVIRDVINVHMEELSNHWQEEQEKAEDDAEKNEERRSASVDS
RQSGGSYLDAECSRHRRDRSRSPHKRKRNKDKDKNCESRRRKERDGERHHSHKRRKQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH