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Report for CCDS44540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44540.1 Public Homo sapiens 11 IRAG1 24 110 108 CCDS HistoryNCBI Gene:10335Re-query CCDS DB by CCDS ID:44540.1Re-query CCDS DB by GeneID:10335See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 44540.1
This CCDS representation uses a downstream AUG start codon compared to CCDS44539.1. It is supported by the mRNA AK127209.1, which lacks the exon containing the alternative non-AUG (CUG) start codon described in PMID:10321731.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424001.5 ENSP00000401205.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424001.5Link to Ensembl Protein Viewer:ENSP00000401205.1Re-query CCDS DB by Nucleotide ID:ENST00000424001Re-query CCDS DB by Protein ID:ENSP00000401205
Original member Current member EBI ENST00000534266.6 ENSP00000433296.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534266.6Link to Ensembl Protein Viewer:ENSP00000433296.2Re-query CCDS DB by Nucleotide ID:ENST00000534266Re-query CCDS DB by Protein ID:ENSP00000433296
Original member Current member EBI ENST00000547195.5 ENSP00000448278.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547195.5Link to Ensembl Protein Viewer:ENSP00000448278.2Re-query CCDS DB by Nucleotide ID:ENST00000547195Re-query CCDS DB by Protein ID:ENSP00000448278
Original member Current member EBI ENST00000558540.5 ENSP00000453013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558540.5Link to Ensembl Protein Viewer:ENSP00000453013.1Re-query CCDS DB by Nucleotide ID:ENST00000558540Re-query CCDS DB by Protein ID:ENSP00000453013
Original member Current member NCBI NM_001100167.3 NP_001093637.1 Accepted alive Link to Nucleotide Sequence:NM_001100167.3Link to Protein Sequence:NP_001093637.1Re-query CCDS DB by Nucleotide ID:NM_001100167Re-query CCDS DB by Protein ID:NP_001093637Link to BLAST:NP_001093637.1
Original member Current member NCBI NM_001206881.2 NP_001193810.1 Accepted alive Link to Nucleotide Sequence:NM_001206881.2Link to Protein Sequence:NP_001193810.1Re-query CCDS DB by Nucleotide ID:NM_001206881Re-query CCDS DB by Protein ID:NP_001193810Link to BLAST:NP_001193810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093637.1 597 Q9Y6F6-6 597 100% 0 0
NP_001193810.1 597 Q9Y6F6-6 597 100% 0 0

Chromosomal Locations for CCDS 44540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 10576332 10576575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10580455 10580589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10581867 10581986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10591548 10591612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10593492 10593599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10594146 10594195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10600918 10601059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10603120 10603251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10604405 10604545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10606742 10606772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10609728 10609851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10623778 10623856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10625966 10626388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCCCTGAACAGCCCTCAGCCTGGCCCCGTGGAGAGCGAGCTGGGGAAGCAGCTCTTGAAAACGGGCT
GGGAGGGCAGCCCTCTGCCGAGAAGTCCAACCCAGGATGCGGCAGGAGTGGGTCCCCCAGCCTCCCAGGG
GAGAGGCCCAGCTGGAGAGCCGATGGGGCCCGAGGCTGGCTCCAAAGCTGAGCTTCCACCCACTGTGTCC
CGGCCCCCGCTGCTGCGAGGGCTCTCCTGGGACAGTGGCCCTGAAGAACCTGGCCCCCGGCTGCAGAAAG
TGCTTGCCAAGCTGCCACTGGCAGAGGAAGAAAAGCGTTTTGCAGGCAAGGCCGGCGGCAAGCTGGCCAA
GGCCCCTGGTCTCAAAGACTTTCAGATACAAGTGCAGCCCGTGCGGATGCAGAAACTGACCAAGCTCCGA
GAGGAGCACATCCTGATGAGAAATCAGAACTTAGTGGGGCTCAAGCTTCCAGACCTTAGTGAAGCAGCTG
AGCAGGAAAAAGGGCTTCCTTCTGAACTCTCCCCAGCTATTGAGGAAGAAGAGTCAAAGAGTGGCTTAGA
TGTCATGCCTAATATTTCTGATGTGCTGCTGCGCAAACTGCGGGTCCACAGGAGTCTCCCTGGAAGTGCC
CCTCCACTCACTGAAAAGGAAGTTGAGAACGTGTTTGTGCAACTGTCCTTGGCCTTTAGAAATGACAGCT
ACACTCTGGAATCTAGAATTAACCAGGCTGAAAGGGAACGCAACCTGACAGAGGAGAACACTGAGAAAGA
ACTGGAAAACTTCAAAGCTTCCATTACGTCCTCAGCTTCACTCTGGCACCACTGTGAGCACCGGGAAACC
TACCAGAAGTTGCTGGAGGACATCGCTGTCCTGCACCGCCTGGCTGCCCGCCTCTCCAGCCGAGCTGAGG
TGGTAGGCGCCGTCCGCCAGGAAAAGCGCATGTCGAAAGCAACGGAAGTGATGATGCAGTATGTGGAGAA
TCTAAAGAGGACGTATGAGAAGGACCATGCGGAGCTCATGGAGTTTAAAAAGCTTGCAAATCAGAATTCA
AGCCGCAGCTGTGGCCCCTCTGAAGATGGGGTCCCTCGCACGGCACGGTCCATGTCCCTCACGCTGGGAA
AGAATATGCCTCGCCGGAGGGTCAGCGTTGCTGTGGTTCCTAAGTTTAATGCCCTGAATCTGCCTGGCCA
AACTCCCAGCTCATCATCCATTCCCTCCTTACCAGCCTTGTCGGAATCACCCAATGGGAAAGGCAGCCTA
CCTGTCACTTCAGCACTGCCTGCACTTTTGGAAAATGGAAAGACAAATGGGGACCCAGATTGTGAAGCCT
CTGCTCCTGCGCTGACCCTGAGCTGCCTGGAGGAGCTTAGTCAGGAGACCAAGGCCAGGATGGAGGAAGA
AGCCTACAGCAAGGGATTCCAAGAAGGTCTAAAGAAGACCAAAGAACTTCAAGACCTGAAGGAGGAGGAG
GAAGAACAGAAGAGTGAGAGTCCTGAGGAACCTGAAGAGGTAGAAGAAACTGAGGAAGAGGAAAAGGGCC
CAAGAAGCAGCAAACTTGAAGAATTGGTCCATTTCTTACAAGTCATGTATCCCAAACTGTGTCAGCACTG
GCAAGTGATCTGGATGATGGCTGCAGTGATGCTGGTCTTGACTGTTGTGCTGGGGCTCTACAATTCCTAT
AACTCTTGTGCAGAGCAGGCTGATGGGCCCCTTGGAAGATCCACTTGCTCGGCAGCCCAGAGGGACTCCT
GGTGGAGCTCAGGACTCCAGCATGAGCAGCCTACAGAGCAGTAG

Translation (597 aa):
MALNSPQPGPVESELGKQLLKTGWEGSPLPRSPTQDAAGVGPPASQGRGPAGEPMGPEAGSKAELPPTVS
RPPLLRGLSWDSGPEEPGPRLQKVLAKLPLAEEEKRFAGKAGGKLAKAPGLKDFQIQVQPVRMQKLTKLR
EEHILMRNQNLVGLKLPDLSEAAEQEKGLPSELSPAIEEEESKSGLDVMPNISDVLLRKLRVHRSLPGSA
PPLTEKEVENVFVQLSLAFRNDSYTLESRINQAERERNLTEENTEKELENFKASITSSASLWHHCEHRET
YQKLLEDIAVLHRLAARLSSRAEVVGAVRQEKRMSKATEVMMQYVENLKRTYEKDHAELMEFKKLANQNS
SRSCGPSEDGVPRTARSMSLTLGKNMPRRRVSVAVVPKFNALNLPGQTPSSSSIPSLPALSESPNGKGSL
PVTSALPALLENGKTNGDPDCEASAPALTLSCLEELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEE
EEQKSESPEEPEEVEETEEEEKGPRSSKLEELVHFLQVMYPKLCQHWQVIWMMAAVMLVLTVVLGLYNSY
NSCAEQADGPLGRSTCSAAQRDSWWSSGLQHEQPTEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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