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Report for CCDS5787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5787.1 Public Homo sapiens 7 IQUB 24 110 108 CCDS HistoryNCBI Gene:154865Re-query CCDS DB by CCDS ID:5787.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324698.11 ENSP00000324882.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324698.11Link to Ensembl Protein Viewer:ENSP00000324882.6Re-query CCDS DB by Nucleotide ID:ENST00000324698Re-query CCDS DB by Protein ID:ENSP00000324882
Original member Current member EBI ENST00000466202.5 ENSP00000417769.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466202.5Link to Ensembl Protein Viewer:ENSP00000417769.1Re-query CCDS DB by Nucleotide ID:ENST00000466202Re-query CCDS DB by Protein ID:ENSP00000417769
Original member Current member NCBI NM_001282855.2 NP_001269784.1 Accepted alive Link to Nucleotide Sequence:NM_001282855.2Link to Protein Sequence:NP_001269784.1Re-query CCDS DB by Nucleotide ID:NM_001282855Re-query CCDS DB by Protein ID:NP_001269784Link to BLAST:NP_001269784.1
Original member Current member NCBI NM_001321293.2 NP_001308222.1 Accepted alive Link to Nucleotide Sequence:NM_001321293.2Link to Protein Sequence:NP_001308222.1Re-query CCDS DB by Nucleotide ID:NM_001321293Re-query CCDS DB by Protein ID:NP_001308222Link to BLAST:NP_001308222.1
Original member Current member NCBI NM_178827.5 NP_849149.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178827.5Link to Protein Sequence:NP_849149.3Re-query CCDS DB by Nucleotide ID:NM_178827Re-query CCDS DB by Protein ID:NP_849149Link to BLAST:NP_849149.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269784.1 791 Q8NA54-1 791 100% 0 0
NP_001308222.1 791 Q8NA54-1 791 100% 0 0
NP_849149.3 791 Q8NA54-1 791 100% 0 0

Chromosomal Locations for CCDS 5787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 123452743 123452925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123457381 123457566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123461357 123461605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123464833 123465009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123469214 123469384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123479795 123479970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123496696 123496906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123502597 123502752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123502944 123503116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123503202 123503363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123509901 123510035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123511944 123512340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGTCTAATCAACAGGAGAAGTATGAAGCTCAGAATATAGTCAATTCAACAGAAGAGAGTGATGATGCTT
TTGATACTGTCACTATTCCAGTTCCCTCAGAAGAGCCTCAAGAGTCAGATCAAACTGAAGAGCATGAATC
TGGAATAGAACAATTCAGTGAGAGCCATGCAATACATGTTGAGGAGCAGAGTGACCAAAGCTTTTCAAGC
CTGGAACCAGACAATGAACAACTCATGGAAGAGGTTATATCACCAAGACAAGTTTCATATACTCCGCAAC
ATCATGAAAAGCAATATGCAATGCAGAGGCCAAATGATGATAGTTTGGCATTTCTGGATAAAATAAAGTC
TGTAAAGGAATCTTTGCAAGAATCAGTGGAAGATTCTCTAGCAACAGTAAAAGTTGTACTTATTCCAGTG
GGCCAGGAAATTGTAATACCTTTTAAGGTTGATACCATTCTTAAATATCTTAAGGACCATTTTTCACACT
TATTAGGTATCCCACATTCTGTACTGCAGATAAGATACTCAGGAAAAATTCTTAAAAATAATGAGACTCT
AGTACAACATGGAGTTAAGCCACAGGAAATTGTACAAGTGGAAATCTTTTCTACAAATCCAGATCTGTAT
CCAGTCAGAAGAATAGATGGATTAACTGATGTCTCTCAAATCATAACTGTCACTGTCCAAACTGGACTTG
ATCAATACCAGCAGGTACCTGTTGAGATTGTCAAATCTGACTTTCACAAACCATTTCTTGGTGGATTCAG
ACATAAAGTAACAGGAGTAGAGTATCACAATGCTGGAACACAAACTGTACCTAAAAGGATTCCCGAAAGA
CTCAGTATATTTTGTAGGGATACGCAGACAGTTTTTCAGAAAAAAAATCTCCAACAAACTACAAATACAA
CATCCACACAGATGACTAACATTGGTGTATATGTATCAAATATGACTGATAAACTGGTAACACCAGGAAA
GTATTTTTCAGCAGCAGAATACCATGCTCAAAGACTAAAGGCGGTGATAGTGATACAGACTTACTACAGG
CAATGGCATGCTAAAATCTTCGTAGAGAATTTAAGAAGACAGAAAAGCTTAAGACTGGAATGGGAAACAC
AGCAAGAACTAAGGAAGATAAGAGAAAAAGAAGAATGGATAAAATTGGACTATCACCGGAGGCATAATCC
TAAAACAAATGAAGATTTTGAATTTCTTTATAATGCATTAGAATTCTGGCGGCAAGAAGAACTTACACGT
ATTAACCAATCTTTTACTGGAGCTGAAAGGAAAGCTGCTCTGTGTGAACTTCTGGAAAAAGAGACTCAGA
TAATTGCTTCCATTGGGAGACATAGATACATTGCTTATATGGCAAATCAGGAAGCAGCAATACAAGCTTT
TTTGGATAAGTGTTCAGCTCCAAAAATATGGAGAACCCCTAATGGCAAAACAATTGAGATGGATACGCAG
TTCACCATCAGAGCCAGAGAGCTGCAAAATATCTATAAGTGCATTATGCTGAAAAATATCTCCCAAGATG
AGAGGCTGGATGTGCTGTTAACTCTTAAACACACTGTAAAGGAACATGAATGTAAACTAACTCAGGAAAT
TCTAGAATTGATTGACAGAGAGGTTGACCTTATGATGAGAGGAGTCAAACATCATAACCTTGAAGGACTC
AGAAAAAGAATTGCGACACTCTTTTTTCATTATATCAAAACACCTCTGTTTAATCCTGAAGTTGCAAAAT
ACCTTAAGGTCCCTCAAGACCCATTGAAATTTTATAAGAAGATTTACTTTTGCCACAGTTGCCAGCTTTA
TTTGCCTTCTACAGAATTTTCTGTATCATCCACCTCACGCCGCATATACCGGTGTCGTAACTGCATTAAC
CTTCAGAATGAGGCTCAAAAACGAGAATCATTTTTGAAGTACAAATGTTTACTTCAACAGCTCTACTATA
CAGAAGCTGATTATGAAGATGATTCTAAAATTGCTTTCTTGATGCAGCTACAAGACATTCAGTACCTGAC
AGAGAACATCTGGGCGTCCCAGTCAGTCCTCAGTGCTTGCGACAATCTCAGTGATCTGGTCATGGTCAGA
TGGAATAAATCCCTGGAGTGGTCCCCCTGGAACTGCATTCTTCTTACCAAAGATGAAGCAGCTGCTCATC
TCAAGCTAACAAGTATTGAAGAGGGATATGAACGCTCATTTATTCACAAGATCAAACACAAACATATCCT
GGCTAAGAACTATTTTTCTCAGGTTCCAGTGCTGGCTTCATTTATACTTGATGATGGTGAAATTGATGAG
ATCAGATGGAAGTATCACTCAGACACAACACCTAAGATTATAGAATCCCAGAGGCCTCCTCATTAG

Translation (791 aa):
MSNQQEKYEAQNIVNSTEESDDAFDTVTIPVPSEEPQESDQTEEHESGIEQFSESHAIHVEEQSDQSFSS
LEPDNEQLMEEVISPRQVSYTPQHHEKQYAMQRPNDDSLAFLDKIKSVKESLQESVEDSLATVKVVLIPV
GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDLY
PVRRIDGLTDVSQIITVTVQTGLDQYQQVPVEIVKSDFHKPFLGGFRHKVTGVEYHNAGTQTVPKRIPER
LSIFCRDTQTVFQKKNLQQTTNTTSTQMTNIGVYVSNMTDKLVTPGKYFSAAEYHAQRLKAVIVIQTYYR
QWHAKIFVENLRRQKSLRLEWETQQELRKIREKEEWIKLDYHRRHNPKTNEDFEFLYNALEFWRQEELTR
INQSFTGAERKAALCELLEKETQIIASIGRHRYIAYMANQEAAIQAFLDKCSAPKIWRTPNGKTIEMDTQ
FTIRARELQNIYKCIMLKNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHHNLEGL
RKRIATLFFHYIKTPLFNPEVAKYLKVPQDPLKFYKKIYFCHSCQLYLPSTEFSVSSTSRRIYRCRNCIN
LQNEAQKRESFLKYKCLLQQLYYTEADYEDDSKIAFLMQLQDIQYLTENIWASQSVLSACDNLSDLVMVR
WNKSLEWSPWNCILLTKDEAAAHLKLTSIEEGYERSFIHKIKHKHILAKNYFSQVPVLASFILDDGEIDE
IRWKYHSDTTPKIIESQRPPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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