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Report for CCDS5090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5090.1 Public Homo sapiens 6 MFSD4B 24 110 108 CCDS HistoryNCBI Gene:91749Re-query CCDS DB by CCDS ID:5090.1Re-query CCDS DB by GeneID:91749See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000671883.1 ENSP00000499903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671883.1Link to Ensembl Protein Viewer:ENSP00000499903.1Re-query CCDS DB by Nucleotide ID:ENST00000671883Re-query CCDS DB by Protein ID:ENSP00000499903
Original member Current member EBI ENST00000672191.1 ENSP00000500175.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672191.1Link to Ensembl Protein Viewer:ENSP00000500175.1Re-query CCDS DB by Nucleotide ID:ENST00000672191Re-query CCDS DB by Protein ID:ENSP00000500175
Original member Current member EBI ENST00000672750.1 ENSP00000500686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672750.1Link to Ensembl Protein Viewer:ENSP00000500686.1Re-query CCDS DB by Nucleotide ID:ENST00000672750Re-query CCDS DB by Protein ID:ENSP00000500686
Original member Current member EBI ENST00000671876.2 ENSP00000500934.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000671876.2Link to Ensembl Protein Viewer:ENSP00000500934.1Re-query CCDS DB by Nucleotide ID:ENST00000671876Re-query CCDS DB by Protein ID:ENSP00000500934
Original member Current member NCBI NM_153369.4 NP_699200.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153369.4Link to Protein Sequence:NP_699200.2Re-query CCDS DB by Nucleotide ID:NM_153369Re-query CCDS DB by Protein ID:NP_699200Link to BLAST:NP_699200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699200.2 518 Q5TF39 518 100% 0 0

Chromosomal Locations for CCDS 5090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 111259701 111259727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111262257 111262425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111263830 111263946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111265876 111267119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGCTGTGTGCCTCCTTCCTGGGGCTGGGATTGAGTGTTGCTATAGTGGGACCCACGTTTCAAGATTTGG
CAACAAACGTGAACCGAAATATCAGTAGTCTGTCTTTCATTTTTGTGGGTCGTGCCTTGGGATATTTGAG
TGGCTCTGTGATTGGTGGATTTCTTGTCGATGTCATGAATTATTTTTTACTTTTGGGAATCTCAATGTCG
GCTACCACCGTTGGTCTTTATCTTGTTCCTTTTTGCAAGACAGCAATATTACTCACTGTCATGATGTCTA
TCTTCGGTGTTTCAATTGGCATTCTGGATACAGGTGGTAACGTCCTTATCTTGGCTATTTGGGGGGACAA
AGGAGCCCCACATATGCAGGCCTTACACTTCTCTTTTGCCTTGGGTGCCTTTTTGGCTCCACTGCTAGCT
AAACTGGCTTTGGGTCCGACAGCGTCTGCTGAAAACCACACAGAGTCTGACTTCCATCCTGCACTCAACC
AATCATCTGATGCTGACTCAGAAGCTCTGTTTGGAGTACCTAATGATAAGAATTTACTGTGGGCTTATGC
TGTTATCGGTACTTACATGTTCTTAGTTTCTGTCATTTTTTTTTGTCTGTTTTTAAAGAATAGCTCAAAG
CAAGAAAAAGCAAGAGCATCTGCTGAGACATTTCGAAGAGCAAAATATCACAACGCCCTTCTTTGTCTCC
TTTTTCTGTTCTTCTTTTTTTATGTTGGAGCTGAGGTAACATATGGCTCTTATGTTTTCTCATTTGCAAC
CACCCATGCTGGCATGAAAGAAAGTGAAGCTGCTGGGTTGAACTCCATCTTCTGGGGGACATTTGCAGCC
TGCAGGGGCCTGGCAATCTTTTTTGCTACCTGTTTACAGCCTGGAACCATGATTGTGTTGAGCAACATTG
GCAGCCTGACTTCATCTTTATTTCTGGTGCTTTTTGACAAGAACCCAATTTGTCTCTGGATAGCAACTTC
AGTGTATGGGGCTTCAATGGCAACCACATTTCCGAGTGGTGTTTCTTGGATTGAGCAGTACACGACCATC
CATGGGAAATCTGCAGCATTTTTTGTAATTGGTGCTTCCCTGGGAGAAATGGCTATTCCTGCAGTCATTG
GAATTCTTCAAGGAAAATACCCTGATTTGCCTGTAGTTCTGTATACCTCTTTGGGAGCATCAATAGCTAC
TGGTATTTTATTTCCTGTGCTATATAAATTAGCCACTTCACCTCTTGATCGCCAGCGAAAAGAAGACAGA
AAGAGTGAGGACCAGAAAGCTCTGCTCTCTAGCTCCGGGCTAAATGAATATGAGGAAGAGAATGAAGAGG
AGGATGCAGAAAAATGGAATGAAATGGATTTTGAAATGATTGAAACGAATGATACAATGAGGCATTCTAT
AATAGAGACATCTAGAAGTAGTCTGACGGAGCCCACAGCTGAAGTCTATAATCAATACCCATCAAATGCA
CTGGTGTTTGAGTCTTCTCCTTTTAATACTGGCAGTGCCCATGTGAAGCACTTGCCAGAAACCAGGACAA
AAGGGACTAACGTTTAG

Translation (518 aa):
MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMS
ATTVGLYLVPFCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLAPLLA
KLALGPTASAENHTESDFHPALNQSSDADSEALFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSK
QEKARASAETFRRAKYHNALLCLLFLFFFFYVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAA
CRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPICLWIATSVYGASMATTFPSGVSWIEQYTTI
HGKSAAFFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIATGILFPVLYKLATSPLDRQRKEDR
KSEDQKALLSSSGLNEYEEENEEEDAEKWNEMDFEMIETNDTMRHSIIETSRSSLTEPTAEVYNQYPSNA
LVFESSPFNTGSAHVKHLPETRTKGTNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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