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Report for CCDS52750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52750.1 Public Mus musculus 9 Barx2 23 108 98 CCDS HistoryNCBI Gene:12023Re-query CCDS DB by CCDS ID:52750.1Re-query CCDS DB by GeneID:12023See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116615.4 ENSMUSP00000112314.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116615.4Link to Ensembl Protein Viewer:ENSMUSP00000112314.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116615Re-query CCDS DB by Protein ID:ENSMUSP00000112314
Original member Current member NCBI NM_013800.2 NP_038828.2 Accepted alive Link to Nucleotide Sequence:NM_013800.2Link to Protein Sequence:NP_038828.2Re-query CCDS DB by Nucleotide ID:NM_013800Re-query CCDS DB by Protein ID:NP_038828Link to BLAST:NP_038828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038828.2 283 O08686 283 100% 0 0

Chromosomal Locations for CCDS 52750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 31846789 31847055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31854113 31854197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31858731 31859043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31912905 31913091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCACTGCCACGCGGAACTGAGGCTGAGCTCACCCGGCCAGCTCAAAGCAGCCAGGCGGCGCTACAAGA
CTTTCATGATCGATGAGATCCTCTCCAAGGAGACCTGCGACTACTTTGAGAAACTTTCCCTCTACTCTGT
GTGCCCGTCGCTGGTGGTGCGACCCAAGCCCCTGCACTCTTGTACCGGTTCCCCTTCCCTACGGGCATAT
CCTCTCCTGTCTGTGATCACCCGGCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGGCTCGGGACTCA
CCCCAGTGTTAACTCGCCATCCAGTCGCCGCTGCGGAGGCGGCGGCTGCTGCTGCTGAGACCCCTGGTGG
TGAGGCGTTAGCCAGCAGCGAGTCAGAGACAGAACAGCCCACGCCCAGGCAGAAGAAACCACGCAGAAGT
CGCACCATCTTCACCGAGCTGCAGCTCATGGGCCTAGAGAAGAAATTCCAGAAGCAGAAGTATTTGTCTA
CCCCAGACAGGTTGGACTTGGCCCAGTCTCTGGGACTCACTCAGCTGCAAGTGAAGACTTGGTATCAGAA
TCGCAGGATGAAATGGAAGAAGATGGTCCTTAAAGGTGGACAGGAAGCACCCACAAAACCTAAGGGGCGC
CCTAAGAAGAATTCCATTCCCACATCAGAGGAGATTGAAGCTGAAGAGAAGATGAACAGCCAGGCTCAGA
GCCAGGAGCTGCTGGAATCCTCGGAGAGACAGGAGGAGCCCTGTGATACCCAGGAGCCCAAAGCGTGCCT
TGTCCCCTTGGAGGTGGCAGAACCTATTCACCAGCCCCAGGAGTTATCAGAAGCTTCCTCTGAACCCCCA
CCATTAAGCTAA

Translation (283 aa):
MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAY
PLLSVITRQPTVISHLVPTGSGLTPVLTRHPVAAAEAAAAAAETPGGEALASSESETEQPTPRQKKPRRS
RTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGR
PKKNSIPTSEEIEAEEKMNSQAQSQELLESSERQEEPCDTQEPKACLVPLEVAEPIHQPQELSEASSEPP
PLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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