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Report for CCDS42259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42259.1 Public Homo sapiens 17 CTC1 24 110 108 CCDS HistoryNCBI Gene:80169Re-query CCDS DB by CCDS ID:42259.1Re-query CCDS DB by GeneID:80169See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651323.1 ENSP00000498499.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651323.1Link to Ensembl Protein Viewer:ENSP00000498499.1Re-query CCDS DB by Nucleotide ID:ENST00000651323Re-query CCDS DB by Protein ID:ENSP00000498499
Original member Current member NCBI NM_025099.6 NP_079375.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025099.6Link to Protein Sequence:NP_079375.3Re-query CCDS DB by Nucleotide ID:NM_025099Re-query CCDS DB by Protein ID:NP_079375Link to BLAST:NP_079375.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079375.3 1217 Q2NKJ3-1 1217 100% 0 0

Chromosomal Locations for CCDS 42259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8228180 8228319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8228503 8228629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8228727 8228892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8229142 8229206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8229302 8229446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8229891 8229968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8230294 8230468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8230563 8230651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8231276 8231469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8231726 8231815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8231903 8232227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8232361 8232475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8232906 8233032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8234455 8234655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8234749 8234926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8235053 8235285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8235831 8235959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8236058 8236342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8237375 8237519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8238031 8238242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8238392 8238629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8242985 8243148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8248004 8248036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3654 nt):
ATGGCGGCTGGCCGGGCCCAGGTCCCTTCCTCCGAACAAGCCTGGCTTGAGGATGCTCAGGTCTTCATCC
AAAAGACCCTGTGTCCAGCTGTCAAGGAGCCTAATGTCCAGTTGACTCCATTGGTAATTGATTGTGTGAA
GACTGTCTGGTTGTCCCAGGGAAGGAACCAAGGTTCTACACTGCCCCTCAGCTATAGCTTCGTCTCAGTA
CAGGACCTCAAGACTCACCAGCGTCTCCCATGCTGCAGCCACCTGTCGTGGAGCAGTAGTGCATACCAGG
CCTGGGCCCAAGAGGCTGGACCAAATGGGAACCCCCTGCCCCGAGAGCAGCTGTTACTTTTAGGGACACT
AACAGACCTATCGGCAGACTTGGAACAAGAGTGCAGGAACGGAAGCCTCTATGTGAGAGATAACACTGGC
GTCCTGAGCTGTGAGCTCATAGACCTGGACCTTTCTTGGTTGGGCCATCTTTTTCTGTTCCCCCGTTGGA
GTTACCTCCCTCCTGCCAGGTGGAATTCCTCAGGGGAAGGGCACTTGGAGCTGTGGGATGCCCCTGTGCC
AGTGTTTCCTTTGACCATCAGTCCTGGCCCCGTCACGCCTATCCCTGTCCTCTACCCAGAGAGTGCTTCC
TGCCTGCTCAGGCTCAGAAACAAGCTCAGAGGTGTGCAGCGAAACCTGGCTGGGAGTCTAGTTCGATTGA
GTGCTCTGGTGAAAAGTAAACAGAAAGCTTACTTCATCCTGTCTCTTGGTAGATCACACCCAGCTGTCAC
CCACGTGTCCATCATCGTGCAGGTCCCTGCCCAGCTGGTGTGGCACAGAGCCCTTCGGCCTGGTACAGCC
TATGTGCTGACAGAACTGCGAGTGTCCAAGATCCGTGGTCAGCGCCAGCATGTTTGGATGACCAGTCAGT
CCTCCCGTCTGTTGCTGCTGAAACCAGAATGTGTGCAGGAGCTGGAACTGGAGCTGGAAGGACCCCTCTT
AGAGGCTGACCCCAAGCCACTCCCCATGCCCAGCAACTCGGAGGACAAGAAGGATCCAGAAAGTCTTGTC
CGGTATTCTAGACTCCTATCCTATTCGGGAGCAGTCACTGGCGTGTTGAATGAGCCCGCTGGCCTCTATG
AGCTGGATGGGCAGCTGGGGCTCTGCCTTGCCTACCAGCAGTTCCGTGGCCTTAGGCGGGTGATGCGACC
TGGAGTGTGTCTGCAGCTCCAGGATGTTCACCTGCTCCAGTCAGTGGGAGGGGGGACAAGAAGGCCAGTG
CTCGCCCCCTGCCTCCGTGGCGCCGTTCTGCTTCAAAGCTTCTCTCGTCAGAAGCCTGGGGCTCACTCAT
CCCGTCAAGCCTACGGGGCCTCCCTGTACGAGCAGCTGGTGTGGGAACGTCAGTTAGGACTTCCCCTCTA
CCTGTGGGCTACCAAGGCCCTGGAGGAGCTGGCCTGCAAGCTGTGTCCCCATGTGCTGAGACACCACCAG
TTCCTGCAACATTCCTCTCCTGGGAGCCCCAGCCTGGGACTGCAACTCCTGGCTCCTACCCTGGATCTTC
TAGCTCCGCCAGGCAGCCCTGTTCGGAATGCACACAATGAGATCCTTGAAGAGCCACATCACTGTCCCCT
CCAGAAATACACTCGGCTGCAGACTCCCTCCTCCTTCCCCACTCTGGCCACCCTGAAAGAAGAAGGACAG
CGTAAGGCCTGGGCCTCCTTTGACCCTAAGGCCCTTCTGCCCCTCCCGGAGGCCTCCTACCTGCCCAGCT
GCCAACTCAATCGCCGCCTGGCTTGGTCCTGGCTCTGTCTGCTGCCCTCTGCCTTCTGCCCAGCCCAGGT
TTTACTTGGGGTTCTGGTGGCTTCATCTCATAAAGGTTGTCTGCAACTTCGGGACCAAAGTGGTTCCCTG
CCCTGCCTGCTCCTGGCCAAGCACTCTCAACCCCTCAGTGACCCACGGCTGATAGGCTGCCTGGTGCGGG
CAGAGAGGTTTCAGTTGATCGTAGAGAGGGACGTGAGAAGCAGCTTCCCTTCCTGGAAGGAGCTGAGCAT
GCCAGGCTTCATCCAGAAGCAGCAGGCCAGAGTCTATGTCCAGTTCTTTCTGGCTGATGCCCTGATCCTG
CCTGTGCCCAGACCCTGCCTTCATTCAGCAACACCCTCAACACCTCAGACAGATCCCACCGGCCCAGAGG
GACCCCACCTAGGACAGAGCCGGCTCTTCTTGCTCTGCCACAAGGAGGCCCTCATGAAGCGTAATTTTTG
TGTCCCCCCAGGAGCAAGTCCAGAGGTGCCCAAGCCCGCCCTCAGTTTCTATGTGTTGGGGAGCTGGCTT
GGGGGCACCCAGAGGAAGGAGGGTACTGGATGGGGGCTGCCCGAGCCCCAGGGAAATGACGACAATGATC
AGAAGGTTCACCTCATTTTCTTTGGCTCTTCAGTCCGCTGGTTTGAGTTCTTGCACCCGGGACAGGTGTA
CCGACTCATAGCTCCTGGCCCCGCTACACCAATGTTGTTTGAAAAGGATGGTTCATCCTGCATATCTCGG
CGTCCTCTGGAGTTGGCTGGCTGTGCATCCTGCCTCACTGTCCAGGACAACTGGACTCTGGAGCTTGAAA
GCTCCCAGGATATCCAAGATGTGCTGGATGCAAACAAGTCATTGCCTGAATCCTCACTGACCGACCTGCT
CAGTGACAATTTCACAGATTCCTTGGTGTCTTTCTCCGCTGAGATTTTGTCACGGACACTATGTGAACCC
CTTGTGGCGTCTCTCTGGATGAAACTGGGGAACACGGGGGCCATGAGAAGGTGTGTGAAGCTAACAGTCG
CTCTTGAGACTGCTGAATGTGAATTCCCCCCTCACCTGGATGTATATATAGAAGACCCACACTTGCCTCC
CTCACTAGGACTACTTCCAGGAGCCCGGGTCCACTTCAGCCAGTTGGAGAAAAGGGTTTCCAGATCTCAC
AATGTTTATTGTTGTTTCCGGTCATCCACTTATGTGCAGGTCCTGAGTTTTCCCCCTGAGACCACCATCA
GCATTCCCCTGCCCCACATCTACCTGGCTGAACTTCTGCAGGGTGGTCAGTCCCCATTCCAGGCCACTGC
CTCTTGCCATATCGTCTCTGTCTTCAGCCTTCAGCTCTTCTGGGTGTGTGCTTATTGTACCAGCATCTGC
CGGCAGGGAAAGTGCACTCGCCTGGGCTCCACTTGCCCTACGCAGACAGCTATAAGCCAGGCCATCATCA
GGCTCCTGGTGGAGGATGGGACTGCCGAAGCCGTGGTGACCTGTAGGAATCACCATGTGGCAGCAGCACT
AGGGCTGTGTCCTAGAGAGTGGGCCTCCCTCCTAGATTTCGTCCAAGTGCCAGGCAGAGTGGTCTTGCAG
TTTGCAGGGCCTGGAGCCCAACTTGAGTCTTCAGCCAGGGTTGACGAGCCCATGACCATGTTCCTCTGGA
CACTTTGTACTAGCCCCTCTGTCCTCCGTCCTATTGTGCTTTCTTTTGAGCTGGAAAGGAAACCGTCGAA
GATCGTCCCATTAGAACCTCCTCGGCTACAGCGATTCCAGTGTGGAGAGCTCCCTTTCCTGACTCACGTG
AACCCCAGGCTCCGATTGTCCTGCCTTTCTATCCGAGAGTCAGAGTACTCCAGCTCTCTGGGGATCCTTG
CTTCCTCCTGTTAA

Translation (1217 aa):
MAAGRAQVPSSEQAWLEDAQVFIQKTLCPAVKEPNVQLTPLVIDCVKTVWLSQGRNQGSTLPLSYSFVSV
QDLKTHQRLPCCSHLSWSSSAYQAWAQEAGPNGNPLPREQLLLLGTLTDLSADLEQECRNGSLYVRDNTG
VLSCELIDLDLSWLGHLFLFPRWSYLPPARWNSSGEGHLELWDAPVPVFPLTISPGPVTPIPVLYPESAS
CLLRLRNKLRGVQRNLAGSLVRLSALVKSKQKAYFILSLGRSHPAVTHVSIIVQVPAQLVWHRALRPGTA
YVLTELRVSKIRGQRQHVWMTSQSSRLLLLKPECVQELELELEGPLLEADPKPLPMPSNSEDKKDPESLV
RYSRLLSYSGAVTGVLNEPAGLYELDGQLGLCLAYQQFRGLRRVMRPGVCLQLQDVHLLQSVGGGTRRPV
LAPCLRGAVLLQSFSRQKPGAHSSRQAYGASLYEQLVWERQLGLPLYLWATKALEELACKLCPHVLRHHQ
FLQHSSPGSPSLGLQLLAPTLDLLAPPGSPVRNAHNEILEEPHHCPLQKYTRLQTPSSFPTLATLKEEGQ
RKAWASFDPKALLPLPEASYLPSCQLNRRLAWSWLCLLPSAFCPAQVLLGVLVASSHKGCLQLRDQSGSL
PCLLLAKHSQPLSDPRLIGCLVRAERFQLIVERDVRSSFPSWKELSMPGFIQKQQARVYVQFFLADALIL
PVPRPCLHSATPSTPQTDPTGPEGPHLGQSRLFLLCHKEALMKRNFCVPPGASPEVPKPALSFYVLGSWL
GGTQRKEGTGWGLPEPQGNDDNDQKVHLIFFGSSVRWFEFLHPGQVYRLIAPGPATPMLFEKDGSSCISR
RPLELAGCASCLTVQDNWTLELESSQDIQDVLDANKSLPESSLTDLLSDNFTDSLVSFSAEILSRTLCEP
LVASLWMKLGNTGAMRRCVKLTVALETAECEFPPHLDVYIEDPHLPPSLGLLPGARVHFSQLEKRVSRSH
NVYCCFRSSTYVQVLSFPPETTISIPLPHIYLAELLQGGQSPFQATASCHIVSVFSLQLFWVCAYCTSIC
RQGKCTRLGSTCPTQTAISQAIIRLLVEDGTAEAVVTCRNHHVAAALGLCPREWASLLDFVQVPGRVVLQ
FAGPGAQLESSARVDEPMTMFLWTLCTSPSVLRPIVLSFELERKPSKIVPLEPPRLQRFQCGELPFLTHV
NPRLRLSCLSIRESEYSSSLGILASSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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