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Report for CCDS24674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24674.1 Public Mus musculus 11 Hspa4 23 108 98 CCDS HistoryNCBI Gene:15525Re-query CCDS DB by CCDS ID:24674.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020630.7 ENSMUSP00000020630.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020630.7Link to Ensembl Protein Viewer:ENSMUSP00000020630.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020630Re-query CCDS DB by Protein ID:ENSMUSP00000020630
Original member Current member NCBI NM_008300.3 NP_032326.3 Accepted alive Link to Nucleotide Sequence:NM_008300.3Link to Protein Sequence:NP_032326.3Re-query CCDS DB by Nucleotide ID:NM_008300Re-query CCDS DB by Protein ID:NP_032326Link to BLAST:NP_032326.3

Chromosomal Locations for CCDS 24674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53261612 53261815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53262264 53262425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53262880 53262999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53265034 53265141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53265924 53266049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53266966 53267118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53268490 53268585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53269688 53269869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53270946 53271079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53272014 53272120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53272727 53272878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53275143 53275219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53280468 53280712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53283529 53283662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53284100 53284199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53286853 53286975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53289024 53289164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53292257 53292314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53300060 53300166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2529 nt):
ATGTCGGTGGTGGGCATAGACCTGGGCTTTCAGAGCTGCTATGTCGCTGTGGCCCGCGCCGGCGGCATCG
AGACGATCGCTAACGAGTATAGCGACCGCTGCACGCCGGCATGTGTTTCTTTTGGTCCTAAGAATCGTTC
AATTGGAGCAGCAGCTAAGAGCCAGGTAATTTCTAATGCCAAGAACACAGTTCAAGGCTTTAAAAGATTC
CATGGGCGTGCATTCTCCGATCCATTTGTGGAAGCAGAAAAATCTAATCTTGCATATGATATTGTGCAGT
TGCCCACTGGATTAACGGGCATAAAGGTTACATATATGGAAGAAGAGAGGAATTTTACCACGGAACAAGT
GACTGCCATGCTTTTGTCGAAACTGAAGGAGACAGCAGAGAGTGTTCTTAAGAAGCCTGTGGTAGACTGT
GTTGTCTCGGTTCCTAGTTTCTACACTGATGCAGAACGGCGGTCAGTGATGGATGCCACACAGATTGCTG
GTCTCAATTGTTTGCGGTTAATGAATGAAACAACTGCAGTTGCTCTTGCTTATGGAATCTATAAACAAGA
CCTTCCTGCCTTAGAAGAAAAACCAAGAAATGTAGTTTTTGTAGATATGGGACATTCTGCCTATCAAGTT
TCTGTATGTGCATTTAATAAAGGAAAACTGAAAGTTTTGGCCACAGCTTTTGATACAACATTGGGAGGCA
GAAAATTTGATGAGGTGTTGGTAAATCACTTCTGTGAAGAATTTGGAAAGAAATACAAGCTAGACATAAA
ATCTAAAATTCGTGCTTTATTACGACTGTCTCAAGAGTGTGAGAAACTCAAGAAATTGATGAGTGCGAAT
GCTTCAGACCTCCCTTTGAGCATTGAGTGTTTTATGAATGATATTGATGTGTCCGGAACTATGAATAGAG
GCAAATTTTTGGAGATGTGTGATGATCTCCTAGCAAGAGTGGAGCCGCCACTTCGAAGCGTCTTGGAGCA
ATCCAAGTTAAAGAAAGAAGATATTTATGCAGTGGAGATAGTTGGTGGTGCCACACGAATCCCTGCAGTG
AAAGAGAAGATCAGCAAGTTTTTTGGTAAAGAACTCAGCACAACATTAAATGCAGATGAAGCTGTCACTC
GAGGCTGTGCTCTGCAGTGTGCAATTTTATCACCTGCTTTCAAAGTCAGAGAATTTTCTATCACTGATGT
GGTACCATATCCAATATCTTTGCGATGGAATTCTCCAGCTGAAGAGGGGTTAAGTGACTGTGAAGTCTTC
CCCAAAAACCATGCTGCTCCTTTCTCCAAAGTCCTCACCTTCTACAGAAAGGAACCTTTCACTCTTGAGG
CCTACTATAGTTCTCCTCAGGATTTGCCCTATCCAGATCCTGCTATAGCTCAGTTCTCAGTTCAGAAAGT
CACTCCACAGTCTGATGGCTCCAGCTCAAAAGTGAAAGTCAAGGTCCGGGTGAACGTGCACGGCATCTTC
AGTGTGTCCAGTGCGGCCTTGGTGGAGGTGCACAAGTCTGAAGAGAGTGAGGAGCCCATGGAGACGGATC
AGAATGCAAAGGAAGAGGAGAAGATGCAAGTGGACCAGGAAGAACCACATACTGAAGAGCAGCAGCAGCA
GCCACAGACACCAGCAGAAAACAAGGCGGAGTCTGAGGAGATGGAGACATCTCAAGCTGGATCAAAAGAT
AAAAAGACGGACCAACCACCTCAAGCAAAGAAGGCAAAAGTGAAGACCAGCACTGTGGACCTGCCCATTG
AGAGCCAGCTGCTCTGGCAGCTGGACCGGGAGATGCTCGGCCTGTACACAGAGAATGAGGGTAAGATGAT
CATGCAGGATAAACTGGAGAAGGAACGGAATGACGCCAAGAATGCTGTGGAAGAGTATGTGTATGAGATG
AGAGACAAGCTTAGTGGTGAATATGAGAAGTTTGTGAGTGAAGATGATCGTAATACTTTTACCTTAAAAT
TAGAGGATACTGAAAATTGGCTGTATGAAGATGGAGAAGATCAACCAAAGCAAGTTTATGTAGACAAATT
GGCTGAATTAAAAAGTTTAGGTCAACCCATTAAGACACGGTTCCAGGAATCTGAAGAAAGACCAAAATTA
TTTGAAGAACTAGGGAAGCAAATCCAACAGTATATGAAAGTGATCAGCTCTTTCAAAAACAAGGAGGACC
AGTATGAACACTTGGATGCTGCTGACGTGACAAAGGTAGAGAAAAGCACCAATGAGGCGATGGAGTGGAT
GAATAGCAAGCTTAACCTGCAGAACAAACAGAGCCTGACGGTGGATCCAGTTGTCAAGACAAAGGAGATT
GAAGCTAAAATTAAGGAGCTGACAAGTATTTGCAGTCCTATAATTTCAAAACCCAAACCCAAAGTGGAAC
CCCCAAAGGAGGAACCAAAACATGCTGAGCAGAATGGACCAGTGGATGGCCAAGGAGACAACCCAGGCTC
CCAGGCTGCTGAGCACGGTGCAGACACAGCTGTGCCTTCTGATGGCGACAAGAAGCTTCCTGAGATGGAC
ATTGATTGA

Translation (842 aa):
MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACVSFGPKNRSIGAAAKSQVISNAKNTVQGFKRF
HGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDC
VVSVPSFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQV
SVCAFNKGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSAN
ASDLPLSIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQSKLKKEDIYAVEIVGGATRIPAV
KEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGLSDCEVF
PKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIF
SVSSAALVEVHKSEESEEPMETDQNAKEEEKMQVDQEEPHTEEQQQQPQTPAENKAESEEMETSQAGSKD
KKTDQPPQAKKAKVKTSTVDLPIESQLLWQLDREMLGLYTENEGKMIMQDKLEKERNDAKNAVEEYVYEM
RDKLSGEYEKFVSEDDRNTFTLKLEDTENWLYEDGEDQPKQVYVDKLAELKSLGQPIKTRFQESEERPKL
FEELGKQIQQYMKVISSFKNKEDQYEHLDAADVTKVEKSTNEAMEWMNSKLNLQNKQSLTVDPVVKTKEI
EAKIKELTSICSPIISKPKPKVEPPKEEPKHAEQNGPVDGQGDNPGSQAAEHGADTAVPSDGDKKLPEMD
ID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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