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Report for CCDS11518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11518.1 Public Homo sapiens 17 LRRC46 24 110 108 CCDS HistoryNCBI Gene:90506Re-query CCDS DB by CCDS ID:11518.1Re-query CCDS DB by GeneID:90506See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269025.9 ENSP00000269025.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269025.9Link to Ensembl Protein Viewer:ENSP00000269025.4Re-query CCDS DB by Nucleotide ID:ENST00000269025Re-query CCDS DB by Protein ID:ENSP00000269025
Original member Current member NCBI NM_033413.4 NP_219481.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033413.4Link to Protein Sequence:NP_219481.1Re-query CCDS DB by Nucleotide ID:NM_033413Re-query CCDS DB by Protein ID:NP_219481Link to BLAST:NP_219481.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_219481.1 321 Q96FV0 321 100% 0 0

Chromosomal Locations for CCDS 11518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47831990 47831999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47832100 47832205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47834425 47834533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47835353 47835399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47835666 47835775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47836033 47836102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47836333 47836475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47836750 47837120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGTCTGGAGGGAAGTCAGCCCAGGGTCCAGAGGAAGGGGGCGTCTGCATCACTGAAGCCCTTATCACTA
AGCGGAACTTGACTTTCCCTGAAGATGGGGAACTGTCAGAGAAGATGTTTCACACTCTTGATGAACTGCA
GACTGTCCGCCTGGACCGGGAGGGGATTACTACTATCAGGAACTTAGAAGGCCTCCAGAATCTTCACAGT
CTCTATCTGCAAGGGAATAAGATCCAGCAAATTGAGAACCTGGCTTGCATCCCCTCCTTGCGCTTCCTGT
CTCTGGCAGGAAACCAAATCAGGCAGGTGGAAAACCTCCTCGACCTCCCATGCCTCCAGTTTCTGGACCT
TTCTGAGAACCTGATAGAAACATTGAAGCTGGATGAGTTCCCCCAGAGCCTTCTCATCCTCAACCTGTCT
GGAAACAGCTGCACCAACCAGGATGGCTACCGCGAGCTGGTGACAGAAGCCCTGCCACTTCTCCTGGACC
TGGACGGGCAGCCTGTGGTGGAGCGCTGGATTTCGGATGAGGAGGATGAAGCCTCAAGCGATGAGGAGTT
CCCAGAGCTGAGTGGCCCATTCTGCTCAGAACGAGGCTTCCTCAAGGAGCTGGAGCAGGAGCTGAGCAGG
CACAGGGAGCACCGGCAACAGACGGCCCTGACAGAGCACCTGCTGAGGATGGAGATGCAGCCCACCCTCA
CCGACCTGCCCCTGCTACCTGGGGTGCCCATGGCTGGGGACAGCAGCCCTTCTGCCACTCCTGCGCAAGG
GGAGGAGACAGTCCCTGAGGCCGTCTCCTCACCCCAGGCCTCCTCTCCCACCAAGAAACCATGCAGTCTG
ATTCCCAGGGGCCACCAAAGCTCTTTCTGGGGAAGGAAGGGGGCACGAGCAGCCACAGCCCCCAAGGCCT
CTGTGGCTGAGGCCCCCAGCACAACCAAAACTACGGCCAAGAGAAGCAAGAAATGA

Translation (321 aa):
MSGGKSAQGPEEGGVCITEALITKRNLTFPEDGELSEKMFHTLDELQTVRLDREGITTIRNLEGLQNLHS
LYLQGNKIQQIENLACIPSLRFLSLAGNQIRQVENLLDLPCLQFLDLSENLIETLKLDEFPQSLLILNLS
GNSCTNQDGYRELVTEALPLLLDLDGQPVVERWISDEEDEASSDEEFPELSGPFCSERGFLKELEQELSR
HREHRQQTALTEHLLRMEMQPTLTDLPLLPGVPMAGDSSPSATPAQGEETVPEAVSSPQASSPTKKPCSL
IPRGHQSSFWGRKGARAATAPKASVAEAPSTTKTTAKRSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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