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Report for CCDS12571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12571.1 Public Homo sapiens 19 CYP2A13 24 110 108 CCDS HistoryNCBI Gene:1553Re-query CCDS DB by CCDS ID:12571.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330436.4 ENSP00000332679.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330436.4Link to Ensembl Protein Viewer:ENSP00000332679.1Re-query CCDS DB by Nucleotide ID:ENST00000330436Re-query CCDS DB by Protein ID:ENSP00000332679
Original member Current member NCBI NM_000766.5 NP_000757.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000766.5Link to Protein Sequence:NP_000757.2Re-query CCDS DB by Nucleotide ID:NM_000766Re-query CCDS DB by Protein ID:NP_000757Link to BLAST:NP_000757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000757.2 494 Q16696 494 100% 0 0

Chromosomal Locations for CCDS 12571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41088472 41088651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41088929 41089091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41090047 41090196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41090404 41090564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41091732 41091908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41093630 41093771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41094245 41094432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41094959 41095100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41095760 41095941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGCTGGCCTCAGGGCTGCTTCTGGTGACCTTGCTGGCCTGCCTGACTGTGATGGTCTTGATGTCAGTCT
GG
CGGCAGAGGAAGAGCAGGGGGAAGCTGCCTCCGGGACCCACCCCATTGCCCTTCATTGGAAACTACCT
G
CAGCTGAACACAGAGCAGATGTACAACTCCCTCATGAAGATCAGTGAGCGCTATGGCCCTGTGTTCACC
ATT
CACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACC
AG
GCTGAGGAGTTCAGCGGGCGAGGCGAGCAGGCCACCTTCGACTGGCTCTTCAAAGGCTATGGCGTGGC
G
TTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCCATCGCCACCCTAAGGGGTTTTGGCGTG
GGC
AAGCGCGGCATCGAGGAACGCATCCAGGAGGAGGCGGGCTTCCTCATCGACGCCCTCCGGGGCACGC
AC
GGCGCCAATATCGATCCCACCTTCTTCCTGAGCCGCACAGTCTCCAATGTCATCAGCTCCATTGTCTT
T
GGGGACCGCTTTGACTATGAGGACAAAGAGTTCCTGTCACTGTTGCGCATGATGCTGGGAAGCTTCCAG
TTC
ACGGCAACCTCCACGGGGCAGCTCTATGAGATGTTCTCTTCGGTGATGAAACACCTGCCAGGACCAC
AG
CAACAGGCCTTTAAGGAGCTGCAAGGGCTGGAGGACTTCATCGCCAAGAAGGTGGAGCACAACCAGCG
C
ACGCTGGATCCCAATTCCCCACGGGACTTCATCGACTCCTTTCTCATCCGCATGCAGGAGGAGGAGAAG
AAC
CCCAACACAGAGTTCTACTTGAAGAACCTGGTGATGACCACCCTGAACCTCTTCTTTGCGGGCACTG
AG
ACCGTGAGCACCACCCTGCGCTACGGTTTCCTGCTGCTCATGAAGCACCCAGAGGTGGAGGCCAAGGT
C
CATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGGCCAAGATGCCC
TAC
ACAGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACATGCTCCCCATGGGTTTGGCCCACAGGG
TC
AACAAGGACACCAAGTTTCGGGATTTCTTCCTCCCTAAGGGCACTGAAGTGTTCCCTATGCTGGGCTC
C
GTGCTGAGAGACCCCAGGTTCTTCTCCAACCCCCGGGACTTCAATCCCCAGCACTTCCTGGATAAGAAG
GGG
CAGTTTAAGAAGAGTGATGCTTTTGTGCCCTTTTCCATCGGAAAGCGGTACTGTTTTGGAGAAGGCC
TG
GCCAGAATGGAGCTCTTTCTCTTCTTCACCACCATCATGCAGAACTTTCGCTTCAAGTCCCCTCAGTC
G
CCTAAGGATATCGACGTGTCCCCCAAACACGTGGGCTTTGCCACGATCCCACGAAACTACACCATGAGC
TTC
CTGCCCCGCTGA


Translation (494 aa):
MLASGLLLVTLLACLTVMVLMSVWRQRKSRGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFT
I
HLGPRRVVVLCGHDAVKEALVDQAEEFSGRGEQATFDWLFKGY
GVAFSNGERAKQLRRFSIATLRGFGV
G
KRGIEERIQEEAGFLIDALRGTH
GANIDPTFFLSRTVSNVISSIVFGDRFDYEDKEFLSLLRMMLGSFQ
F
TATSTGQ
LYEMFSSVMKHLPGPQQQAFKELQGLEDFIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEK
N
PNTEFYLKNLVMTTLNLFFAGTETVSTTLRYGFLLLMKHPEVE
AKVHEEIDRVIGKNRQPKFEDRAKMP
Y
TEAVIHEIQRFGDMLPMGLAHRVNKDTKFRDFFLPK
GTEVFPMLGSVLRDPRFFSNPRDFNPQHFLDKK
G
QFKKSDAFVPFSI
GKRYCFGEGLARMELFLFFTTIMQNFRFKSPQSPKDIDVSPKHVGFATIPRNYTMS
F
LPR




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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