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Report for CCDS13377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13377.1 Public Homo sapiens 20 SNX21 24 110 108 CCDS HistoryNCBI Gene:90203Re-query CCDS DB by CCDS ID:13377.1Re-query CCDS DB by GeneID:90203See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000491381.6 ENSP00000418593.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000491381.6Link to Ensembl Protein Viewer:ENSP00000418593.1Re-query CCDS DB by Nucleotide ID:ENST00000491381Re-query CCDS DB by Protein ID:ENSP00000418593
Original member Current member NCBI NM_033421.4 NP_219489.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033421.4Link to Protein Sequence:NP_219489.1Re-query CCDS DB by Nucleotide ID:NM_033421Re-query CCDS DB by Protein ID:NP_219489Link to BLAST:NP_219489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_219489.1 373 Q969T3-1 373 100% 0 0

Chromosomal Locations for CCDS 13377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45833920 45833940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45834201 45834468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45834959 45835116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45840639 45841313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCACCGTGGGACGCAGGAGGGTGCCATGGCCTCCCGGCTCCTGCACCGGCTGCGGCACGCCTTGGCCG
GCGACGGCCCCGGGGAGGCGGCGGCCAGTCCAGAGGCCGAGCAGTTTCCGGAGAGCTCAGAGCTGGAGGA
CGACGACGCCGAGGGCCTGTCCTCCCGACTCAGCGGCACCCTCAGCTTCACCAGCGCCGAGGACGACGAG
GACGACGAGGACGAGGACGACGAGGAGGCTGGCCCTGACCAGCTGCCCCTCGGGGATGGGACGTCAGGAG
AAGACGCAGAACGGAGCCCCCCACCTGATGGGCAGTGGGGCAGTCAGCTCCTGGCGCGGCAGCTGCAGGA
TTTCTGGAAGAAGTCCCGGAACACCTTGGCACCCCAGCGGCTGCTCTTCGAAGTGACCAGCGCTAACGTT
GTCAAGGACCCGCCCTCCAAGTACGTGCTCTACACCCTCGCCGTGATCGGCCCAGGACCGCCAGATTGCC
AGCCAGCCCAGATCTCTCGCCGTTACTCGGACTTTGAGCGGCTGCACCGAAACCTGCAGCGGCAATTCCG
GGGCCCAATGGCTGCCATCTCCTTCCCCCGTAAGCGGCTGCGCCGGAATTTTACTGCAGAGACCATTGCC
CGCCGTAGCCGGGCCTTTGAGCAGTTTTTGGGTCACCTGCAGGCAGTGCCTGAGCTGCGCCATGCCCCGG
ACCTGCAGGACTTCTTCGTGCTGCCGGAGCTGCGGCGGGCACAGAGCCTCACCTGTACTGGCCTCTATCG
TGAGGCTCTGGCACTCTGGGCCAATGCCTGGCAGCTGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGAC
CGCCCCCTGCTGACCCTGGCTGGGCTGGCCGTGTGCCACCAGGAGCTGGAAGACCCTGGAGAGGCCCGGG
CATGCTGTGAGAAGGCCCTGCAGCTGCTTGGGGACAAGAGCCTCCACCCTTTGCTGGCACCCTTTCTGGA
GGCCCATGTCCGGCTCTCCTGGCGCCTGGGCCTGGACAAACGTCAATCAGAGGCTCGGCTCCAAGCCCTG
CAGGAGGCAGGCCTTACCCCCACACCACCCCCCAGTCTCAAAGAATTGCTCATCAAGGAGGTGCTGGACT
AA

Translation (373 aa):
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDE
DDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANV
VKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIA
RRSRAFEQFLGHLQAVPELRHAPDLQDFFVLPELRRAQSLTCTGLYREALALWANAWQLQAQLGTPSGPD
RPLLTLAGLAVCHQELEDPGEARACCEKALQLLGDKSLHPLLAPFLEAHVRLSWRLGLDKRQSEARLQAL
QEAGLTPTPPPSLKELLIKEVLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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