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Report for CCDS45573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45573.1 Public Homo sapiens 17 RAP1GAP2 24 110 108 CCDS HistoryNCBI Gene:23108Re-query CCDS DB by CCDS ID:45573.1Re-query CCDS DB by GeneID:23108See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254695.13 ENSP00000254695.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254695.13Link to Ensembl Protein Viewer:ENSP00000254695.8Re-query CCDS DB by Nucleotide ID:ENST00000254695Re-query CCDS DB by Protein ID:ENSP00000254695
Original member Current member EBI ENST00000542807.1 ENSP00000444890.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542807.1Link to Ensembl Protein Viewer:ENSP00000444890.1Re-query CCDS DB by Nucleotide ID:ENST00000542807Re-query CCDS DB by Protein ID:ENSP00000444890
Original member Current member NCBI NM_015085.5 NP_055900.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015085.5Link to Protein Sequence:NP_055900.4Re-query CCDS DB by Nucleotide ID:NM_015085Re-query CCDS DB by Protein ID:NP_055900Link to BLAST:NP_055900.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055900.4 730 Q684P5-1 730 100% 0 0

Chromosomal Locations for CCDS 45573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2796528 2796571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2800515 2800550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2905284 2905368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2957759 2957794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2962670 2962714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2963430 2963462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2963856 2964068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2965540 2965643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2980287 2980365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2981195 2981248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2984983 2985066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2991297 2991397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2995337 2995466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2998221 2998376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3005369 3005440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3005955 3006041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3008011 3008145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3018061 3018198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3020477 3020595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026008 3026121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026350 3026464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026944 3027070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3030922 3030998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3032411 3032419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGTTTGGCCGGAAGCGCAGTGTCTCCTTTGGGGGCTTCGGATGGATCGACAAGACCATGCTGGCAAGTC
TGAAGGTCAAGAAGCAGGAGCTGGCCAACAGCTCGGATGCGACCCTCCCAGACCGGCCGCTCTCCCCTCC
TCTCACGGCACCTCCCACCATGAAGTCGTCGGAGTTCTTTGAGATGCTGGAGAAAATGCAGGGGATCAAG
CTTGAAGAGCAGAAGCCGGGACCCCAGAAGAACAAGGACGACTATATCCCATACCCCAGCATCGACGAGG
TTGTGGAGAAGGGAGGCCCGTACCCTCAGGTCATCCTGCCACAGTTTGGGGGCTATTGGATCGAGGACCC
GGAGAACGTGGGCACCCCAACATCGCTGGGGAGCAGCATCTGTGAGGAGGAGGAAGAGGACAACCTCAGC
CCCAACACATTTGGCTACAAGCTCGAGTGCAAGGGTGAAGCCAGGGCCTACCGGAGGCACTTCCTGGGGA
AGGATCATCTAAACTTTTACTGTACCGGCAGCAGCCTGGGGAACTTGATCCTGTCCGTCAAGTGCGAGGA
AGCAGAGGGGATCGAGTACCTCCGGGTCATCCTTAGGTCCAAACTGAAGACGGTACATGAGCGGATCCCC
TTGGCTGGACTGAGCAAGCTTCCCAGTGTCCCTCAGATTGCAAAGGCTTTCTGTGATGATGCAGTGGGAC
TGAGATTCAATCCTGTCCTGTACCCCAAGGCCTCCCAAATGATTGTGTCCTATGATGAGCATGAAGTCAA
CAACACATTCAAATTCGGAGTCATTTATCAAAAAGCCAGGCAGACCCTGGAGGAGGAGCTATTTGGGAAC
AATGAGGAGAGCCCAGCTTTTAAGGAGTTCTTGGACCTGCTGGGGGACACGATCACACTGCAGGATTTCA
AAGGTTTCCGAGGAGGCCTGGACGTGACCCACGGACAGACAGGGGTGGAATCAGTGTACACAACATTCCG
GGACAGGGAGATCATGTTTCACGTTTCCACAAAGCTGCCATTTACCGACGGAGACGCCCAGCAGCTCCAG
AGAAAGAGACACATTGGAAATGACATCGTGGCCATCATCTTCCAAGAGGAAAACACGCCGTTTGTCCCAG
ACATGATAGCCTCCAATTTCTTACATGCCTACATCGTCGTGCAGGTCGAGACCCCAGGCACAGAGACCCC
ATCCTACAAGGTCTCTGTCACTGCGCGGGAAGATGTGCCCACCTTTGGTCCACCTCTGCCCAGTCCCCCC
GTTTTCCAGAAGGGCCCGGAATTCAGGGAGTTTCTGCTCACCAAGCTCACCAATGCCGAGAACGCCTGCT
GCAAGTCGGACAAGTTTGCAAAGCTGGAGGACCGGACCAGGGCTGCCCTCCTGGACAACCTTCACGATGA
GCTCCACGCCCACACACAGGCCATGCTGGGACTGGGCCCAGAGGAGGACAAGTTTGAGAATGGAGGCCAC
GGGGGGTTCCTGGAGTCTTTTAAGAGGGCCATCCGCGTACGCAGCCACTCCATGGAGACCATGGTGGGCG
GCCAGAAGAAGTCGCACAGTGGGGGCATCCCTGGCAGCCTCAGCGGGGGCATCTCCCACAACAGCATGGA
GGTCACCAAGACCACCTTCTCGCCTCCAGTGGTGGCGGCAACGGTGAAGAACCAGTCACGGAGTCCCATC
AAGCGACGCTCGGGGCTCTTCCCCCGCCTGCACACGGGCTCAGAAGGCCAGGGCGACAGCCGGGCACGAT
GTGACAGCACATCCAGCACACCCAAGACCCCAGATGGTGGACACTCCTCTCAGGAGATAAAGTCTGAGAC
CTCATCCAATCCCAGCTCTCCGGAAATCTGCCCCAACAAGGAGAAGCCCTTCATGAAGTTGAAGGAAAAC
GGCCGTGCCATCTCCCGCTCCTCCTCCAGCACCAGCAGCGTCAGCAGCACTGCAGGGGAGGGCGAGGCCA
TGGAGGAGGGCGACAGTGGGGGCAGCCAGCCGTCCACGACCTCACCCTTCAAGCAGGAGGTGTTTGTCTA
CAGCCCGTCCCCGAGCAGCGAGAGCCCCAGCCTGGGGGCAGCTGCCACCCCGATCATCATGAGCCGGAGT
CCCACAGATGCCAAAAGCAGAAACTCCCCGAGATCGAACCTGAAATTCCGCTTTGACAAGCTCAGCCATG
CCAGCTCTGGTGCGGGTCACTAA

Translation (730 aa):
MFGRKRSVSFGGFGWIDKTMLASLKVKKQELANSSDATLPDRPLSPPLTAPPTMKSSEFFEMLEKMQGIK
LEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLS
PNTFGYKLECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGIEYLRVILRSKLKTVHERIP
LAGLSKLPSVPQIAKAFCDDAVGLRFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGN
NEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQ
RKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPP
VFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGGH
GGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVAATVKNQSRSPI
KRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFMKLKEN
GRAISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPSSESPSLGAAATPIIMSRS
PTDAKSRNSPRSNLKFRFDKLSHASSGAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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