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Report for CCDS51482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51482.1 Public Mus musculus 5 Slc2a9 23 108 98 CCDS HistoryNCBI Gene:117591Re-query CCDS DB by CCDS ID:51482.1Re-query CCDS DB by GeneID:117591See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143758.7 ENSMUSP00000118430.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143758.7Link to Ensembl Protein Viewer:ENSMUSP00000118430.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143758Re-query CCDS DB by Protein ID:ENSMUSP00000118430
Original member Current member NCBI NM_001102415.1 NP_001095885.1 Accepted alive Link to Nucleotide Sequence:NM_001102415.1Link to Protein Sequence:NP_001095885.1Re-query CCDS DB by Nucleotide ID:NM_001102415Re-query CCDS DB by Protein ID:NP_001095885Link to BLAST:NP_001095885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095885.1 431 Q3T9X0-3 431 100% 0 0

Chromosomal Locations for CCDS 51482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38351083 38351337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38362843 38362970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38379918 38379993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38382043 38382144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38391714 38391824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38436540 38436685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38440650 38440774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38453102 38453262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38477395 38477493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38480039 38480131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGATTCCAGGGAGCTTGCTTTAGCTTCCCTGATGTGTGACACCGGTGGCCCTGGGGAGCTCTCTGTGG
GTCACCAGCAGAGGAGGACAAAGAAATGGTCCTTCTCGCTCGTCGTGGCAGCTCTCGTGGGAGCCTTCGG
GTCCTCCTTCCTCTACGGGTACAACCTCTCCGTGGTGAACGCGCCCACGCCGTATATCAAGGCCTTTTAC
AATGGAACCTGGTACAGGAGGCATGGACAGCCCATTGACCCGGATACCCTGACTCTGCTCTGGTCTGTGA
CTGTGTCCATATTTGCGATTGGTGGCCTGGTGGGAACGCTGATGGTGAAGATGATTGGAAAGTTTCTTGG
GAGGAAGTCCACATTGCTGGTCAACAATGGATTTGCCATTTCCGCAGCGTTGCTGATGGCATGCTCACTC
CGGGCAGGAACCTTTGAGATGCTCATTGTGGGACGGTTCATCATGGGTGTGGATGGAGGCATTGCACTCA
GCGCGCTCCCCATGTATCTCAACGAGATCTCACCCAAGGAGATCCGGGGCTCTCTGGGCCAGGTGACTGC
CATCTTCATCTGCATTGGCGTGTTTTCTGGACAGTTGCTGGGCCTGCCGGAGCTGCTGGGAAGGATCTGG
TTCTACACCAACAGCATCTTTGGGAAAGCTGGGATCCCTCAGGACAAGATCCCATACATCACCCTGAGCA
CGGGAGGAATTGAAACACTGGCTGCTATCTTCTCTGGCTTGGTCATTGAGCGCTTAGGAAGGAGACCTCT
CCTCATTGGTGGCTTCGGGCTGATGGCCCTCTTCTTTGGGACCCTCACCGCGACACTGACCCTGCAGGAC
CAAGCTCCCTGGGTCCCTTACCTCAGCATTGTGTGCATCTTGGCCATCATTGCCTCGTTCTGCAGCGGTC
CAGGTGGGATCCCATTCATCCTGACCGGAGAGTTCTTCCAACAGTCAGAGCGACCGGCAGCCTTCATGAT
CGCAGGCACAGTCAACTGGCTCTCAAACTTCGCCGTAGGGCTCCTTTTCCCTTTCATCCAGAAAAGCCTG
GACTCCTACTGCTTCCTCGTCTTCGCCACAATATGTATCGCAGGTGCTACCTACTTCTATTTTGTCCTCC
CGGAGACCAAGAACAGAACCCATGCAGAAATCAGCCAGGCATTTGCCAAGAGGAACAAGGCTCAGCCCCC
AGAGGTGAAGGCTGATTCAGCCATGACTGAGGAGAAGGCCAACAGCCAGACTGAGCCCGATTCATCCTCC
ACGCTGGACAGCTATGGCCAAAACAAAATTGTCTAA

Translation (431 aa):
MDSRELALASLMCDTGGPGELSVGHQQRRTKKWSFSLVVAALVGAFGSSFLYGYNLSVVNAPTPYIKAFY
NGTWYRRHGQPIDPDTLTLLWSVTVSIFAIGGLVGTLMVKMIGKFLGRKSTLLVNNGFAISAALLMACSL
RAGTFEMLIVGRFIMGVDGGIALSALPMYLNEISPKEIRGSLGQVTAIFICIGVFSGQLLGLPELLGRIW
FYTNSIFGKAGIPQDKIPYITLSTGGIETLAAIFSGLVIERLGRRPLLIGGFGLMALFFGTLTATLTLQD
QAPWVPYLSIVCILAIIASFCSGPGGIPFILTGEFFQQSERPAAFMIAGTVNWLSNFAVGLLFPFIQKSL
DSYCFLVFATICIAGATYFYFVLPETKNRTHAEISQAFAKRNKAQPPEVKADSAMTEEKANSQTEPDSSS
TLDSYGQNKIV


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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