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Report for CCDS46349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46349.1 Public Homo sapiens 2 TRABD2A 24 110 108 CCDS HistoryNCBI Gene:129293Re-query CCDS DB by CCDS ID:46349.1Re-query CCDS DB by GeneID:129293See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335459.9 ENSP00000335004.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335459.9Link to Ensembl Protein Viewer:ENSP00000335004.5Re-query CCDS DB by Nucleotide ID:ENST00000335459Re-query CCDS DB by Protein ID:ENSP00000335004
Original member Current member NCBI NM_001080824.3 NP_001074293.1 Accepted alive Link to Nucleotide Sequence:NM_001080824.3Link to Protein Sequence:NP_001074293.1Re-query CCDS DB by Nucleotide ID:NM_001080824Re-query CCDS DB by Protein ID:NP_001074293Link to BLAST:NP_001074293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074293.1 456 Q86V40-2 456 100% 0 0

Chromosomal Locations for CCDS 46349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84821917 84822100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84823953 84824204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84832055 84832145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84839149 84839323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84870225 84870785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84880932 84881039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAGTCCCTGGAGCTGGTTCCTGCTGCAGACCCTCTGCCTCCTGCCCACGGGCGCAGCTTCGCGGCGCG
GGGCGCCCGGCACCGCCAACTGCGAGCTCAAGCCCCAACAAAGCGAGCTGAATTCCTTCTTGTGGACCAT
TAAGCGAGACCCACCATCTTACTTCTTTGGCACAATCCATGTCCCGTACACCCGAGTTTGGGACTTCATC
CCCGACAACTCTAAGGAGGCTTTCCTGCAGAGCAGCATTGTGTACTTTGAGTTGGATCTCACAGACCCCT
ATACCATCTCAGCTCTCACCAGCTGTCAGATGCTGCCACAGGGCGAGAACCTCCAAGATGTGCTCCCCAG
GGACATCTACTGCCGCCTCAAGCGCCACCTGGAGTATGTCAAGCTCATGATGCCCTTGTGGATGACCCCA
GACCAGCGCGGCAAGGGGCTCTACGCAGACTACCTCTTCAATGCTATTGCCGGAAACTGGGAGCGCAAGA
GGCCTGTCTGGGTGATGCTCATGGTCAACTCCCTGACTGAAGTGGACATTAAGTCCCGTGGAGTGCCTGT
CTTAGACCTGTTCCTTGCCCAGGAGGCTGAGCGGCTGAGGAAACAGACTGGGGCAGTGGAAAAGGTGGAA
GAGCAGTGCCATCCATTGAATGGGTTGAACTTTTCACAGGTTCCCAATTTTATTAATGCCACGCTACCAC
CTCAGGAGCGCATCACTGCTCAGGAGATTGACAGCTACTTACGCCGGGAGCTGATCTACAAGCGGAATGA
GAGAATAGGGAAGCGGGTGAAGGCCCTTTTGGAGGAGTTCCCTGACAAAGGCTTCTTCTTTGCCTTTGGA
GCTGGTCATTTCATGGGCAACAACACAGTGCTGGATGTTTTGCGGCGTGAAGGCTATGAGGTAGAACACG
CCCCTGCTGGACGACCCATCCACAAAGGGAAGAGTAAAAAGACCTCCACACGGCCCACTCTGTCCACCAT
CTTTGCTCCAAAAGTCCCTACCCTGGAAGTACCGGCACCAGAAGCCGTATCCTCAGGGCACTCAACGCTG
CCTCCCCTTGTGTCCCGGCCTGGAAGTGCCGACACGCCCAGTGAGGCCGAACAGAGGTTCCGGAAGAAGC
GGAGGCGGTCACAGCGGAGGCCGCGACTCCGGCAATTCAGCGATCTGTGGGTCCGCCTGGAGGAGAGTGA
CATAGTCCCGCAACTCCAGGTCCCTGTCCTGGACAGGCACATCTCCACTGAACTGCGGCTCCCTCGCCGT
GGGCATTCCCACCACAGCCAGATGGTGGCCAGCAGTGCCTGCCTGTCTCTCTGGACTCCTGTGTTCTGGG
TGCTGGTGCTGGCTTTCCAAACAGAGACACCCCTCCTGTAA

Translation (456 aa):
MSPWSWFLLQTLCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVPYTRVWDFI
PDNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIYCRLKRHLEYVKLMMPLWMTP
DQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLFLAQEAERLRKQTGAVEKVE
EQCHPLNGLNFSQVPNFINATLPPQERITAQEIDSYLRRELIYKRNERIGKRVKALLEEFPDKGFFFAFG
AGHFMGNNTVLDVLRREGYEVEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL
PPLVSRPGSADTPSEAEQRFRKKRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLPRR
GHSHHSQMVASSACLSLWTPVFWVLVLAFQTETPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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