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Report for CCDS5587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5587.1 Public Homo sapiens 7 DTX2 24 110 108 CCDS HistoryNCBI Gene:113878Re-query CCDS DB by CCDS ID:5587.1Re-query CCDS DB by GeneID:113878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324432.9 ENSP00000322885.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324432.9Link to Ensembl Protein Viewer:ENSP00000322885.5Re-query CCDS DB by Nucleotide ID:ENST00000324432Re-query CCDS DB by Protein ID:ENSP00000322885
Original member Current member EBI ENST00000413936.6 ENSP00000390218.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413936.6Link to Ensembl Protein Viewer:ENSP00000390218.2Re-query CCDS DB by Nucleotide ID:ENST00000413936Re-query CCDS DB by Protein ID:ENSP00000390218
Original member Current member EBI ENST00000430490.7 ENSP00000411986.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430490.7Link to Ensembl Protein Viewer:ENSP00000411986.2Re-query CCDS DB by Nucleotide ID:ENST00000430490Re-query CCDS DB by Protein ID:ENSP00000411986
Original member Current member NCBI NM_001102594.3 NP_001096064.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102594.3Link to Protein Sequence:NP_001096064.1Re-query CCDS DB by Nucleotide ID:NM_001102594Re-query CCDS DB by Protein ID:NP_001096064Link to BLAST:NP_001096064.1
Original member Current member NCBI NM_001102595.3 NP_001096065.1 Accepted alive Link to Nucleotide Sequence:NM_001102595.3Link to Protein Sequence:NP_001096065.1Re-query CCDS DB by Nucleotide ID:NM_001102595Re-query CCDS DB by Protein ID:NP_001096065Link to BLAST:NP_001096065.1
Original member Current member NCBI NM_020892.4 NP_065943.2 Accepted alive Link to Nucleotide Sequence:NM_020892.4Link to Protein Sequence:NP_065943.2Re-query CCDS DB by Nucleotide ID:NM_020892Re-query CCDS DB by Protein ID:NP_065943Link to BLAST:NP_065943.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096064.1 622 Q86UW9-1 622 100% 0 0
NP_001096065.1 622 Q86UW9-1 622 100% 0 0
NP_065943.2 622 Q86UW9-1 622 100% 0 0

Chromosomal Locations for CCDS 5587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 76480510 76480777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76482508 76483147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76492153 76492253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76497337 76497477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76500441 76500520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76502298 76502456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76503426 76503587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76504356 76504445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 76505374 76505601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGCCATGGCCCCAAGCCCTTCCCTGGTGCAGGTGTACACCAGCCCCGCGGCTGTGGCCGTGTGGGAAT
GGCAGGACGGGCTGGGCACCTGGCACCCCTACAGTGCCACCGTCTGCAGCTTCATCGAGCAGCAGTTTGT
CCAGCAGAAGGGCCAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCAGGCAGACCCC
TCGCTGGCCCCTTACATTATTGACCTCCCCAGCTGGACCCAGTTCCGCCAGGACACCGGCACCATGCGGG
CTGTGCGGAGACACCTGTTCCCCCAGCACTCAGCCCCTGGCCGAGGTGTCGTCTGGGAGTGGCTGAGCGA
CGATGGCTCCTGGACTGCCTATGAAGCCAGCGTCTGTGACTATCTGGAGCAGCAGGTGGCCAGGGGCAAC
CAGCTCGTGGACTTGGCCCCCCTGGGGTACAACTACACTGTCAACTACACCACCCACACGCAGACCAACA
AGACTTCCAGCTTCTGCCGCAGCGTGCGGCGCCAAGCAGGGCCGCCTTACCCGGTGACCACCATCATCGC
TCCGCCGGGCCACACAGGCGTCGCCTGCTCTTGCCACCAGTGCCTCAGTGGCAGCAGAACTGGCCCCGTG
TCAGGCCGCTACCGCCACTCCATGACCAACCTCCCTGCATACCCCGTCCCCCAGCACCCCCCACACAGGA
CCGCTTCTGTGTTTGGGACCCACCAGGCCTTTGCACCGTACAACAAACCCTCACTCTCCGGGGCCCGGTC
TGCGCCCAGGCTGAACACCACCAACGCCTGGGGCGCAGCTCCTCCTTCCCTGGGGAGCCAGCCCCTCTAC
CGCTCCAGCCTCTCCCACCTGGGACCGCAGCACCTGCCCCCAGGATCCTCCACCTCCGGTGCAGTCAGTG
CCTCCCTCCCCAGCGGTCCCTCAAGCAGCCCAGGGAGCGTCCCTGCCACTGTGCCCATGCAGATGCCAAA
GCCCAGCAGAGTCCAGCAGGCGCTCGCAGGCATGACGAGTGTTCTGATGTCAGCCATTGGACTCCCTGTG
TGTCTTAGCCGCGCACCCCAGCCCACCAGCCCTCCCGCCTCCCGTCTGGCTTCCAAAAGTCACGGCTCAG
TTAAGAGATTGAGGAAAATGTCCGTGAAAGGAGCGACCCCGAAGCCAGAGCCAGAGCCAGAGCAGGTCAT
AAAAAACTACACGGAAGAGCTGAAAGTGCCCCCAGATGAGGACTGCATCATCTGCATGGAGAAGCTGTCC
ACAGCGTCTGGATACAGCGATGTGACTGACAGCAAGGCAATCGGGTCCCTAGCTGTGGGCCACCTCACCA
AGTGCAGCCATGCCTTCCACCTGCTGTGCCTCCTGGCCATGTACTGCAACGGCAATAAGGATGGAAGTCT
GCAGTGTCCCTCCTGCAAAACCATCTATGGAGAGAAGACGGGGACCCAGCCCCAGGGAAAGATGGAGGTA
TTACGGTTCCAGATGTCGCTCCCCGGCCACGAGGACTGCGGGACCATCCTCATAGTTTACAGCATTCCCC
ATGGTATCCAGGGCCCTGAGCACCCCAATCCCGGAAAGCCGTTCACTGCCAGAGGGTTTCCCCGCCAGTG
CTACCTTCCAGACAACGCCCAGGGCCGCAAGGTCCTAGAGCTCCTGAAGGTGGCCTGGAAGAGGCGGCTC
ATCTTCACAGTGGGCACGTCCAGCACCACGGGTGAGACGGACACCGTGGTATGGAACGAGATCCACCACA
AGACAGAGATGGACCGCAACATTACGGGCCACGGCTATCCCGACCCCAACTACCTGCAGAACGTGCTGGC
TGAGCTGGCTGCCCAGGGGGTGACCGAGGACTGCCTGGAGCAGCAGTGA

Translation (622 aa):
MAMAPSPSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRFGLGSLAHSIPLGQADP
SLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEWLSDDGSWTAYEASVCDYLEQQVARGN
QLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRRQAGPPYPVTTIIAPPGHTGVACSCHQCLSGSRTGPV
SGRYRHSMTNLPAYPVPQHPPHRTASVFGTHQAFAPYNKPSLSGARSAPRLNTTNAWGAAPPSLGSQPLY
RSSLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALAGMTSVLMSAIGLPV
CLSRAPQPTSPPASRLASKSHGSVKRLRKMSVKGATPKPEPEPEQVIKNYTEELKVPPDEDCIICMEKLS
TASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEV
LRFQMSLPGHEDCGTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRL
IFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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