NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23468.1 Public Mus musculus 9 Col6a6 23 108 98 CCDS HistoryNCBI Gene:245026Re-query CCDS DB by CCDS ID:23468.1Re-query CCDS DB by GeneID:245026See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060896.4 ENSMUSP00000060840.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060896.4Link to Ensembl Protein Viewer:ENSMUSP00000060840.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060896Re-query CCDS DB by Protein ID:ENSMUSP00000060840
Original member Current member NCBI NM_172927.3 NP_766515.2 Accepted alive Link to Nucleotide Sequence:NM_172927.3Link to Protein Sequence:NP_766515.2Re-query CCDS DB by Nucleotide ID:NM_172927Re-query CCDS DB by Protein ID:NP_766515Link to BLAST:NP_766515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766515.2 1182 Q8C6K9-2 1182 100% 0 0

Chromosomal Locations for CCDS 23468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105774262 105774836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105777547 105778122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105780614 105781171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105781905 105782465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105783630 105784250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105785679 105786275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105788895 105788955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3549 nt):
ATGCTGCTGGTTTTGTGCCTGACAATGATTTGTTTCCACGTGTGTGTGAACCAAGATTCTGGCCCCGAGT
ACGCAGACGTGGTGTTTCTGGTGGACAGCTCCGATCACCTAGGGCTTAAGTCCTTTCCTCTTGTGAAAAC
TTTCATCCACAAGATGATCAGCAGCCTCCCCATAGAGGCCAACAAGTACCGCGTGGCCCTGGCCCAGTAC
AGCGATGCTCTCCACAATGAGTTCCAGCTGGGCACCTTCAAGAACAGGAACCCCATGCTGAACCACCTGA
AGAAGAACTTCGGGTTCATCGGTGGCTCCCTGAAGATAGGGAACGCCCTGCAGGAGGCTCACAGGACCTA
TTTCTCTGCTCCCACAAATGGAAGAGACAAGAAACAGTTCCCCCCAATCCTGGTGGTGCTGGCTTCAGCA
GAGTCTGAGGATGATGTGGAAGAGGCTGCGAAGGCCCTGCGGGAAGATGGGGTGAAAATCATCTCTGTGG
GGGTGCAGAAGGCTTCTGAGGAAAACCTGAAGGCGATGGCCACCTCTCAGTTCCATTTCAATCTCAGGAC
TGCCAGAGACCTCAGCGTGTTTGCCCCAAACATGACAGAGATCATCAAGGATGTGACTCAGTACAGGGAA
GGAATGGCAGATGACATTATTGTAGAAGCCTGCCAAGGCCCTTCTGTGGCTGATGTGGTGTTCCTGTTGG
ATATGGCCATCAACGGCAGCCAGGAGGACCTAGATCATCTTAAAGCATTCCTGGGCGAAAGCATCTCTGC
CCTGGACATAAAGGAAAATTGCATGAGGGTTGGCCTGGTGACCTATAGCAATGAGACAAGGGTGATCAGC
TCTCTGAGCACGGGTAACAACAAGACAGAAGTCTTGCAGCGCATACAGGATCTGTCCCCTCAAGTAGGGC
AGGCCTACACTGGAGCTGCCCTCAGAAAGACTAGGAAGGAAATCTTCAGTGCACAGAGGGGCAGTCGGAA
GAACCAAGGGGTCCCTCAGATCGCTGTGCTGGTGACCCACAGAGCATCAGAAGACAACGTGACCAAGGCA
GCTGTCAACCTCCGGCGGGAGGGAGTGACCATCTTTACCATGGGCATAGAGGGGGCTAACCCAGACGAGC
TGGAGAAGATCGCATCCCACCCTGCGGAGCAGTTCACCTCCAAACTGGGCAACTTCTCTGAGCTGGCCAC
CCACAACCAGACGTTCCTGAAGAAACTGCGGAACCAAATCACACACACGGTCTCTGTCTTCTCAGAACGG
ACTGAGACCCTCAAATCTGCCTGTGTGGACACAGAGGAAGCCGATATCTATCTACTCATTGATGGTTCAG
GGAGCACCCAGCCCACAGACTTCCATGAAATGAAGACCTTCCTGTCAGAGGTGGTAGGCATGTTCAACAT
TGCTCCCCACAAGGTGCGAGTAGGGGCCGTGCAGTACGCCGACACCTGGGACTTGGAATTTGAGATCTCT
AAGTATAGTAACAAGCCTGACTTGGGAAAGGCCATCGAGAATATCAGGCAGATGGGTGGGAATACCAACA
CAGGGGCGGCTTTGAACTTCACACTGAAGCTGTTGCAAAGAGCAAAGAAGGAACGAGGAAGCAAAGTGCC
GTGTCACCTGGTGGTTCTGACCAATGGCATGTCTCGGGACAGCGTCCTGGGGCCTGCCCATAAGCTGAGA
GAGGAAAACATCAGAGTGCATGCGATCGGTGTCAAGGAAGCCAACCAAACGCAGCTTCGGGAGATAGCGG
GAGAGGAAAAGCGAGTTTACTACGTCCATGAGTTCGATGCCTTGAGGAACATAAGGAACCAAGTGGTTCA
GGAGATCTGTGCTGAAGAAGCCTGCAGAGACATGAAAGCGGACATCATGTTTCTGGTGGACAGCTCTGGC
AGCATCGGACCTGAAAACTTCAGCAAGATGAAGATGTTTATGAAGAACCTGGTGAGCAAATCCCAGATCG
GGGCTGACCGGGTGCAAATTGGCGTGGTCCAGTTCAGCCACGAAAACAAGGAGGAGTTTCAGCTCAACAC
GTTCATGTCTCAAAGTGACATCGCCAACGCCATTGACCGAATGACTCACATTGGAGAAACAACCTTGACG
GGCAGTGCCCTGACCTTTGTGTCTCAGTACTTCAGTCCCGATAAGGGGGCCAGGCCCAATGTCAGGAAGT
TCCTCATTCTTATCACGGATGGTGAGGCTCAGGACATAGTAAGGGACCCAGCGATCGCCCTTCGAAAAGA
AGGTGTGATTATCTATTCTGTGGGAGTATTCGGCTCCAATGTCACCCAGCTTGAGGAGATCAGTGGAAAG
CCAGAGATGGTTTTCTATGTTGAGAATTTTGACATTCTGCAGCATATCGAAGATGACCTCGTTCTGGGGA
TCTGCAGTCCCCGTGAAGAATGCAAGCGGATTGAAGTTTTGGATGTGGTGTTTGTCATCGATAGCTCCGG
CAGCATTGACTATCAAGAATATAACATCATGAAGGACTTCATGATTGGCTTGGTGAAAAAAGCTGACGTG
GGCAAGAATCAGGTCCGGTTTGGAGCCCTGAAGTATGCTGATGACCCCGAAGTGCTGTTTTACCTGGATG
AACTAGGCACGAAGCTGGAGGTAGTTTCAGTGCTCCAGAATGACCATCCCATGGGTGGAAATACTTACAC
CGCTGAGGCCCTCGCCTTCTCCGATCACATGTTCACCGAAGCCCGGGGCAGCCGTCTGCACAAGGGAGTC
CCCCAAGTCCTCATTGTGATTACCGACGGGGAATCTCATGACGCAGAGAAGCTCAACACCACCGCCAAGG
CCCTGAGAGACAAAGGCATTCTCGTCCTGGCTGTGGGGATTGCCGGTGCCAACAGCTGGGAGCTCTTGGC
CATGGCAGGGTCAAGCGACAAGTACTACTTTGTAGAGACCTTCGGAGGCCTGAAGGGAATATTTTCCGAT
GTGTCAGCCAGTGTCTGTAACTCTTCAAAAGTTGATTGTGAAATTGAAAAGGTTGACCTTGTATTCCTCA
TGGATGGTTCAAACAGCATCCATCCGGATGACTTCCAGAAGATGAAGGGGTTTTTGGTGTCGGTCGTTCA
AGACTTCGATGTCAGCCTCAACAGAGTCCGCATAGGCGTGGCACAGTTCAGCGACAGCTACAGGTCAGAG
TTTCTGCTGGGGACGTTCACCGGGGAGAGGGAGATATCCACCCAGATTGAGGGCATCCAGCAGATCTTTG
GATACACCCACATCGGAGATGCTCTCAGGAAGGTGAAGTATTACTTTCAGCCAGACATGGGCAGCAGGAT
CAACGCAGGTACCCCCCAGGTGCTGCTGGTCCTCACAGATGGCCGGTCCCAAGACGAGGTAGCTCAGGCC
GCCGAGGAGCTGAGACACAAAGGTGTGGACATCTACTCGGTGGGCATCGGGGATGTGGATGACCAGGAAT
TGGTCCAGATCACGGGGACCGCGGAGAAAAAACTGACCGTGCATAACTTCGACGAGCTAAAAAAGGTGAA
GAAAAGGATCGTTCGGAACATCTGTACCTCAGGTGGTGAGAGCAGTTAA

Translation (1182 aa):
MLLVLCLTMICFHVCVNQDSGPEYADVVFLVDSSDHLGLKSFPLVKTFIHKMISSLPIEANKYRVALAQY
SDALHNEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALQEAHRTYFSAPTNGRDKKQFPPILVVLASA
ESEDDVEEAAKALREDGVKIISVGVQKASEENLKAMATSQFHFNLRTARDLSVFAPNMTEIIKDVTQYRE
GMADDIIVEACQGPSVADVVFLLDMAINGSQEDLDHLKAFLGESISALDIKENCMRVGLVTYSNETRVIS
SLSTGNNKTEVLQRIQDLSPQVGQAYTGAALRKTRKEIFSAQRGSRKNQGVPQIAVLVTHRASEDNVTKA
AVNLRREGVTIFTMGIEGANPDELEKIASHPAEQFTSKLGNFSELATHNQTFLKKLRNQITHTVSVFSER
TETLKSACVDTEEADIYLLIDGSGSTQPTDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADTWDLEFEIS
KYSNKPDLGKAIENIRQMGGNTNTGAALNFTLKLLQRAKKERGSKVPCHLVVLTNGMSRDSVLGPAHKLR
EENIRVHAIGVKEANQTQLREIAGEEKRVYYVHEFDALRNIRNQVVQEICAEEACRDMKADIMFLVDSSG
SIGPENFSKMKMFMKNLVSKSQIGADRVQIGVVQFSHENKEEFQLNTFMSQSDIANAIDRMTHIGETTLT
GSALTFVSQYFSPDKGARPNVRKFLILITDGEAQDIVRDPAIALRKEGVIIYSVGVFGSNVTQLEEISGK
PEMVFYVENFDILQHIEDDLVLGICSPREECKRIEVLDVVFVIDSSGSIDYQEYNIMKDFMIGLVKKADV
GKNQVRFGALKYADDPEVLFYLDELGTKLEVVSVLQNDHPMGGNTYTAEALAFSDHMFTEARGSRLHKGV
PQVLIVITDGESHDAEKLNTTAKALRDKGILVLAVGIAGANSWELLAMAGSSDKYYFVETFGGLKGIFSD
VSASVCNSSKVDCEIEKVDLVFLMDGSNSIHPDDFQKMKGFLVSVVQDFDVSLNRVRIGVAQFSDSYRSE
FLLGTFTGEREISTQIEGIQQIFGYTHIGDALRKVKYYFQPDMGSRINAGTPQVLLVLTDGRSQDEVAQA
AEELRHKGVDIYSVGIGDVDDQELVQITGTAEKKLTVHNFDELKKVKKRIVRNICTSGGESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH