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Report for CCDS51901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51901.1 Public Mus musculus 6 Vmn2r23 23 108 98 CCDS HistoryNCBI Gene:435916Re-query CCDS DB by CCDS ID:51901.1Re-query CCDS DB by GeneID:435916See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172391.3 ENSMUSP00000126682.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172391.3Link to Ensembl Protein Viewer:ENSMUSP00000126682.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172391Re-query CCDS DB by Protein ID:ENSMUSP00000126682
Original member Current member NCBI NM_001104638.1 NP_001098108.1 Accepted alive Link to Nucleotide Sequence:NM_001104638.1Link to Protein Sequence:NP_001098108.1Re-query CCDS DB by Nucleotide ID:NM_001104638Re-query CCDS DB by Protein ID:NP_001098108Link to BLAST:NP_001098108.1

Chromosomal Locations for CCDS 51901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123702821 123703035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123704350 123704647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123712680 123713477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123729524 123729745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123733273 123733396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123741347 123742239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGAAATTACTTATTGCTTTCTCTCTTCTGATTGTTCTAATTATATTCCAGGAACAAATTTCTTGTTTCT
CCTTAAATATACCTGCTTCTCCTGGCTACTATCAAGATGGGGATTTTGTTATTGGAGGACTTTTTTCCCT
TAGAGTGACTGCTGGAGACACTAGAAGTAGATTTGGCTTTACAGATACAATTCATATACCGGAATATGTT
TATGGGGATCTCACCAAACATTATCAGCACATGTTGGCAATGGTTTTTGCTATAGAAAAAATAAACAAGG
ACCCAAATATTCTATTCAATATGACCCTGGGATTCTCTCTCTTCAATGTTGACTTCATTGAGATGAAGGC
TGTGGAAAGTTCTGTGTCTTTGCTCTCAGGAGAGAGCCCACCAATTCCTAACTACAGTTGTAGGCCTGAG
AAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACAGGAATATCAACTCAGATCTCCCAAATTC
TAAGTCTCTACAATGTCCCACAGATCAGCTATGCTCCTTTTGACCACAGTCTTGGGACCAGAGTCCAGCT
CCAGTCTCCTTACCAGTTTCCTGTGCACACCACAGCTCTGTATCAGGGAATTATTCAACTGCTGCTATAC
TTCACTTGGGTCTGGGTTGGTCTGGTAGTCCCAGATGATATGCGGGGAGAACTCTTCCTTAGGGACATCA
CAGAGGAGATGACGAACCATGGACTTTGTGTTGCATTTGCAGAAAAGGTTCCAGAATTTCCTGCTAAGGA
CACAGTAAACAGGGAACTTTTTATGGAAAGATTCACATTGACACATGTTATTGTGGCATTTGGTGACACA
TATTCTCTTCTGAGATTTGTCTATAACATCTTCTGCAATACTCCTTTTGGAAATATCTGGATCACAACGT
CTGATTGGGATATCACTACATTATCCTTTCAACAAAATCTAGGTTATACATACTTTGGTGGAGGATTATC
ATTTTTTGTTCACATGGATGAAATTCTGGGATTCAAGGATTTTCTCAGAGACGTTCAACCTAGAAAATAC
CCTCATGATATCTTTATCCAGGATGTGTGGTCCATCTTATTTGAATGTCCATATTTTGAACAGCATGGGA
TCAGGGAACTGAGTCAATGTGAACAAAATGGCAGCCTGAGCACACGACCTCTGCATGTTTGGGATATGAA
TACCTCACCTATGAGCTACAAAGTCCATGCTGCTGTGTATGCCATTGCCCAGGCACTCCATGAGGAGCTG
TCACTCAGAGTAGAAGGAGGCTCACTCCATAAAGCTCCTCTCCCATGGAAGCTCCATCCATTCTTACAGA
AGGGTCAACTCAGGAGAAACACTAATGAAGCAAGCATGAATAAGGAAGTTTGGACAACTGAGCTTGACAT
CTTTAATTACCAGTCTCTACAGAGTGGTACCAAAGCTCAAGTGAAAGTTGGCGAGTTTGTCTTTGGATCT
CACAGTGTTCAGCATCTTTCCCTAAATGACAAACTCATAACTTGGGGTGAACACCACAGTCAAACTCCTT
TATCTGTTTGCAGTCAAAGTTGTCCATTTGGATATAGGAAAACACCCATTGAAGGGAAACCATTCTGTTG
TTATGATTGTATCCCATGTCCAGATGGAGAGATTGCAAATGAAACAGATATGGATCAGTGCATCAAGTGT
CCTGAAGATCAGTATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTATGGCCTTTTTGTCCCATG
AAGATACTCTGGGAGCTCTTTTGGTCTGCACGGCCATTAGTTTATCTGCATTTGCAGCCATGATTTTAGG
ATTATTTATCCATTATCGGGATACACCCATTGTCAGAGCAAATAACAGAAATCTCAGTTATCTCCTCCTA
GTTTCTCTGATGCTCTGTTTCTTTTGCTCATTAATATTCATTGGCCAACCTGGAACAGTCACTTGTGTCT
TGAGACAAATGATTTTTGGGGTTGTATTTTCCATTGCTGTTTCTGCTATCTTGGCAAAGACCTTTATTGT
AGTTGTGGCCTTCAAGTCCATCAAACCACGAAGCACCTTACAAATGTGGATAGTGACTCGACTCTCAATC
ACTATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAACATATCCCCCTT
TCCCTGATGTTGACATGCACTCAGAGTTTGGTCACATCATCCTCTGTTGTAATGAGGGGTCCACCCTTGC
ATTCTATTGTGTTCTGGGCTACTTGGGCTTTCTGGCCAGTCTCAGCTTGCTTATTGCTTTTCTGGTGAGA
AGGCTACCTGACAGCTTCAATGAGGCAAAAACAATCACATTCAGCATGCTGGTTTTCTGCAGTGTGTGGA
TTTCTTTCATACCCACTTACCTGAGCTCCACAGGCAAAACCATGGTGGCTGTGGAAATATTTTGCATTCT
GGCCTCCAGTGCTGGCTTACTGGGATGCATGTTTCTTCCCAAATGTTATGTGATCCTACTGAGGTCAGGT
GACCACTCAAGAAAGAAGGTTTTTAAATAA

Translation (849 aa):
MKLLIAFSLLIVLIIFQEQISCFSLNIPASPGYYQDGDFVIGGLFSLRVTAGDTRSRFGFTDTIHIPEYV
YGDLTKHYQHMLAMVFAIEKINKDPNILFNMTLGFSLFNVDFIEMKAVESSVSLLSGESPPIPNYSCRPE
KTDKLVAVIGGISTGISTQISQILSLYNVPQISYAPFDHSLGTRVQLQSPYQFPVHTTALYQGIIQLLLY
FTWVWVGLVVPDDMRGELFLRDITEEMTNHGLCVAFAEKVPEFPAKDTVNRELFMERFTLTHVIVAFGDT
YSLLRFVYNIFCNTPFGNIWITTSDWDITTLSFQQNLGYTYFGGGLSFFVHMDEILGFKDFLRDVQPRKY
PHDIFIQDVWSILFECPYFEQHGIRELSQCEQNGSLSTRPLHVWDMNTSPMSYKVHAAVYAIAQALHEEL
SLRVEGGSLHKAPLPWKLHPFLQKGQLRRNTNEASMNKEVWTTELDIFNYQSLQSGTKAQVKVGEFVFGS
HSVQHLSLNDKLITWGEHHSQTPLSVCSQSCPFGYRKTPIEGKPFCCYDCIPCPDGEIANETDMDQCIKC
PEDQYPNKQRNQCLPKIMAFLSHEDTLGALLVCTAISLSAFAAMILGLFIHYRDTPIVRANNRNLSYLLL
VSLMLCFFCSLIFIGQPGTVTCVLRQMIFGVVFSIAVSAILAKTFIVVVAFKSIKPRSTLQMWIVTRLSI
TIVCCGSIIQVCICAVWLGTYPPFPDVDMHSEFGHIILCCNEGSTLAFYCVLGYLGFLASLSLLIAFLVR
RLPDSFNEAKTITFSMLVFCSVWISFIPTYLSSTGKTMVAVEIFCILASSAGLLGCMFLPKCYVILLRSG
DHSRKKVFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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