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Report for CCDS6176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6176.1 Public Homo sapiens 8 CLVS1 24 110 108 CCDS HistoryNCBI Gene:157807Re-query CCDS DB by CCDS ID:6176.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325897.5 ENSP00000325506.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325897.5Link to Ensembl Protein Viewer:ENSP00000325506.4Re-query CCDS DB by Nucleotide ID:ENST00000325897Re-query CCDS DB by Protein ID:ENSP00000325506
Original member Current member EBI ENST00000519846.5 ENSP00000428402.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519846.5Link to Ensembl Protein Viewer:ENSP00000428402.1Re-query CCDS DB by Nucleotide ID:ENST00000519846Re-query CCDS DB by Protein ID:ENSP00000428402
Original member Current member NCBI NM_173519.3 NP_775790.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173519.3Link to Protein Sequence:NP_775790.1Re-query CCDS DB by Nucleotide ID:NM_173519Re-query CCDS DB by Protein ID:NP_775790Link to BLAST:NP_775790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775790.1 354 Q8IUQ0-1 354 100% 0 0

Chromosomal Locations for CCDS 6176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61299828 61300282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61376605 61376779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61454141 61454251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61458307 61458542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61499455 61499542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGACCAGTCTCTCTTCTTCCAAAATATCAGAAGTTAAACACTTGGAACGGAGATTTGGCCAAGATGA
CCCATTTACAGGCTGGACTCAGTCCAGAGACTATAGAGAAAGCTCGCCTGGAACTGAATGAAAACCCCGA
TGTTTTACATCAGGATATTCAGCAAGTCAGGGACATGATCATCACCAGGCCTGACATTGGATTTTTACGT
ACAGATGATGCCTTCATCCTGAGATTTCTCCGAGCCAGGAAGTTTCACCAAGCGGATGCCTTTAGACTCC
TGGCTCAGTATTTCCAGTACCGCCAGCTAAACCTGGACATGTTCAAAAACTTCAAGGCAGATGATCCCGG
CATTAAGAGGGCTCTGATCGATGGGTTCCCCGGGGTGCTGGAAAACCGAGACCATTACGGCAGGAAGATT
CTTTTGCTGTTTGCAGCCAATTGGGATCAGAGTAGGAACTCCTTCACAGACATCCTTCGTGCCATCCTGC
TGTCATTGGAAGTCCTAATCGAAGATCCGGAGCTTCAGATAAATGGCTTCATTTTAATTATAGACTGGAG
TAATTTTTCCTTCAAACAAGCCTCCAAACTGACACCTTCAATCCTTAAACTGGCCATTGAAGGGTTGCAG
GACAGCTTTCCTGCCCGCTTTGGAGGAGTCCACTTTGTCAACCAGCCCTGGTACATTCATGCCCTCTACA
CACTCATCAAGCCATTTCTTAAAGACAAGACCAGGAAACGGATTTTCCTGCATGGAAACAATTTAAACAG
CCTTCACCAGCTAATACACCCTGAATTTTTGCCCTCTGAATTTGGAGGAACTCTTCCTCCTTATGACATG
GGAACTTGGGCCCGGACGTTACTCGGTCCCGACTACAGCGATGAAAATGACTATACTCACACATCCTATA
ATGCAATGCACGTGAAGCATACGTCCTCGAATCTGGAGAGAGAATGCTCACCCAAGCTGATGAAAAGATC
TCAGTCTGTGGTAGAAGCTGGGACCCTGAAACATGAGGAGAAGGGAGAGAATGAGAACACCCAGCCACTC
CTGGCTCTGGACTGA

Translation (354 aa):
MGPVSLLPKYQKLNTWNGDLAKMTHLQAGLSPETIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLR
TDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKI
LLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQ
DSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSEFGGTLPPYDM
GTWARTLLGPDYSDENDYTHTSYNAMHVKHTSSNLERECSPKLMKRSQSVVEAGTLKHEEKGENENTQPL
LALD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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