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Report for CCDS40921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40921.1 Public Mus musculus X Gm10486 23 108 98 CCDS HistoryNCBI Gene:100039550Re-query CCDS DB by CCDS ID:40921.1Re-query CCDS DB by GeneID:100039550See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101647.3 ENSMUSP00000099170.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101647.3Link to Ensembl Protein Viewer:ENSMUSP00000099170.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101647Re-query CCDS DB by Protein ID:ENSMUSP00000099170
Original member Current member NCBI NM_001109970.1 NP_001103440.1 Accepted alive Link to Nucleotide Sequence:NM_001109970.1Link to Protein Sequence:NP_001103440.1Re-query CCDS DB by Nucleotide ID:NM_001109970Re-query CCDS DB by Protein ID:NP_001103440Link to BLAST:NP_001103440.1

Chromosomal Locations for CCDS 40921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 35069013 35069109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35074718 35074784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35075324 35075358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35078486 35078611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35078921 35078984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35087175 35087256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35089708 35089806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 35090126 35090194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGTCTATTAAGAAACTGTGGGTGATACCAAAGGATGGTTACTTATTACTTCTTGACTATGATTCAGATG
AAGAAGAAGAGCAGGCTCATTCTGAAGTAAAGAGGCCAGCATTTGGCAAACATGAGAATATGCCGCCTCA
CGTAGAAGCAGATGAAGATATAAGAGATGAACAAGACAGTATGTTGGATAAATCTGGAGAAAACGTAAGT
TTCTCAGAGGAATGGCAGCGTTTTGCACGTTCTGTAGAGACACCAATGGAAAACTGGAATTTGTTAAGTG
GTGAACAGCAAGTTAGGAATGCTTCAGAATTGGACCTTATGGAAGTACAGAATCCAGTAACTCATGATGA
TGGGAATGCAAATCCTGAAGAAGTAGTTGGAGATACACGAAAGAAGATCAACAACAAATTGTGTGAGCAG
AAGTTTGATATGGATATACAGAAATTCAATGAAGAACAAGAAAAATCAGTGAACAATTATCAAAAAGAAC
AACAAGCATTAAAACTGTCCGAATGTAGTCAGAGTCCGACCATGGAAGCAATTGAAGACATGCATGAGAA
GTCCATGGAGGGTTTGATGAACATGGAGACCAACAACTACGATATGCTTTTTGATGTAGATGGTGAAGAG
ACATTATGA

Translation (212 aa):
MSIKKLWVIPKDGYLLLLDYDSDEEEEQAHSEVKRPAFGKHENMPPHVEADEDIRDEQDSMLDKSGENVS
FSEEWQRFARSVETPMENWNLLSGEQQVRNASELDLMEVQNPVTHDDGNANPEEVVGDTRKKINNKLCEQ
KFDMDIQKFNEEQEKSVNNYQKEQQALKLSECSQSPTMEAIEDMHEKSMEGLMNMETNNYDMLFDVDGEE
TL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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