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Report for CCDS6532.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6532.2 Public Homo sapiens 9 APTX 24 110 108 CCDS HistoryNCBI Gene:54840Re-query CCDS DB by CCDS ID:6532.2Re-query CCDS DB by GeneID:54840See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 6532.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379825.7 ENSP00000369153.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379825.7Link to Ensembl Protein Viewer:ENSP00000369153.3Re-query CCDS DB by Nucleotide ID:ENST00000379825Re-query CCDS DB by Protein ID:ENSP00000369153
Original member Current member EBI ENST00000468275.6 ENSP00000420263.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468275.6Link to Ensembl Protein Viewer:ENSP00000420263.2Re-query CCDS DB by Nucleotide ID:ENST00000468275Re-query CCDS DB by Protein ID:ENSP00000420263
Original member Current member NCBI NM_001195251.2 NP_001182180.1 Accepted alive Link to Nucleotide Sequence:NM_001195251.2Link to Protein Sequence:NP_001182180.1Re-query CCDS DB by Nucleotide ID:NM_001195251Re-query CCDS DB by Protein ID:NP_001182180Link to BLAST:NP_001182180.1
Original member Current member NCBI NM_001368999.1 NP_001355928.1 Accepted alive Link to Nucleotide Sequence:NM_001368999.1Link to Protein Sequence:NP_001355928.1Re-query CCDS DB by Nucleotide ID:NM_001368999Re-query CCDS DB by Protein ID:NP_001355928Link to BLAST:NP_001355928.1
Original member Current member NCBI NM_175069.3 NP_778239.2 Accepted alive Link to Nucleotide Sequence:NM_175069.3Link to Protein Sequence:NP_778239.2Re-query CCDS DB by Nucleotide ID:NM_175069Re-query CCDS DB by Protein ID:NP_778239Link to BLAST:NP_778239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182180.1 292 Q7Z2E3-9 292 100% 0 0
NP_001355928.1 292 Q7Z2E3-9 292 100% 0 0
NP_778239.2 292 Q7Z2E3-9 292 100% 0 0

Chromosomal Locations for CCDS 6532.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32973684 32973688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32974458 32974561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32984631 32984857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32985971 32986030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32987544 32987846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32988083 32988129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32989759 32989891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGATGCGGGTGTGCTGGTTGGTGAGACAGGACAGCCGGCACCAGCGAATCAGACTTCCACATTTGGAAG
CAGTTGTGATTGGGCGTGGCCCAGAGACCAAGATCACTGATAAGAAATGTTCTCGACAGCAAGTACAGTT
GAAAGCAGAGTGTAACAAGGGATATGTCAAGGTAAAGCAGGTAGGAGTCAATCCCACCAGCATTGACTCA
GTCGTAATTGGGAAGGACCAAGAGGTGAAGCTGCAGCCTGGCCAGGTTCTCCACATGGTGAATGAACTTT
ATCCATATATTGTAGAGTTTGAGGAAGAGGCAAAGAACCCTGGCCTGGAAACACACAGGAAGAGAAAGAG
ATCAGGCAACAGTGATTCTATAGAAAGGGATGCTGCTCAGGAAGCTGAGGCTGGGACAGGGCTGGAACCT
GGGAGCAACTCTGGCCAATGCTCTGTGCCCCTAAAGAAGGGAAAAGATGCACCTATCAAAAAGGAATCCC
TGGGCCACTGGAGTCAAGGCTTGAAGATTTCTATGCAGGACCCCAAAATGCAGGTTTACAAAGATGAGCA
GGTGGTGGTGATAAAGGATAAATACCCAAAGGCCCGTTACCATTGGCTGGTCTTACCGTGGACCTCCATT
TCCAGTCTGAAGGCTGTGGCCAGGGAACACCTTGAACTCCTTAAGCATATGCACACTGTGGGGGAAAAGG
TGATTGTAGATTTTGCTGGGTCCAGCAAACTCCGCTTCCGATTGGGCTACCACGCCATTCCGAGTATGAG
CCATGTACATCTTCATGTGATCAGCCAGGATTTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAAT
TCTTTCAATACAGAATACTTCCTAGAATCACAAGAGTAG

Translation (292 aa):
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDS
VVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEP
GSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSI
SSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN
SFNTEYFLESQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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