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Report for CCDS22440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22440.1 Public Mus musculus 8 Hhip 23 108 98 CCDS HistoryNCBI Gene:15245Re-query CCDS DB by CCDS ID:22440.1Re-query CCDS DB by GeneID:15245See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079038.3 ENSMUSP00000078047.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079038.3Link to Ensembl Protein Viewer:ENSMUSP00000078047.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079038Re-query CCDS DB by Protein ID:ENSMUSP00000078047
Original member Current member NCBI NM_020259.4 NP_064655.4 Accepted alive Link to Nucleotide Sequence:NM_020259.4Link to Protein Sequence:NP_064655.4Re-query CCDS DB by Nucleotide ID:NM_020259Re-query CCDS DB by Protein ID:NP_064655Link to BLAST:NP_064655.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064655.4 700 Q7TN16 700 100% 0 0

Chromosomal Locations for CCDS 22440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79972333 79972526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79974995 79975143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79986936 79987017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79989248 79989378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79990246 79990369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79992474 79992595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79996723 79996866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79997455 79997628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79998159 79998310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80043946 80044147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80045051 80045207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80051428 80051620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80057237 80057515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGCTGAAGATGCTCTCGTTTAAGCTGCTACTGCTGGCCGTGGCTCTGGGCTTCTTTGAAGGAGATGCGA
AG
TTTGGGGAAAGGAACGAGGGGAGCGGAGCGAGAAGGAGACGGTGCCTGAATGGGAACCCCCCAAAGCG
C
CTAAAGAGAAGGGACAGGCGGGTGATGTCCCAGCTGGAGCTGCTCAGTGGAGGAGAGATCCTGTGTGGT
GGC
TTCTACCCACGAGTATCTTGCTGCCTGCAGAGTGACAGCCCTGGATTGGGGCGTCTGGAGAACAAGA
TC
TTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCCCTGCTCCCC
G
CATTCCCAGAGCCTCTTCTACACACCTGAAAGAGATGTCCTGGATGGGGACCTAGCACTTCCACTCCTC
TGC
AAAGACTACTGCAAAGAATTCTTTTATACTTGCCGAGGCCATATTCCAGGTCTTCTTCAAACAACTG
CT
GATGAATTTTGCTTTTACTATGCAAGAAAAGATGCTGGGTTATGCTTTCCAGACTTCCCGAGAAAGCA
A
GTCAGAGGACCAGCATCTAACTACTTGGGCCAGATGGAAGACTACGAGAAAGTGGGGGGGATCAGCAGA
AAA
CACAAACACAACTGCCTCTGTGTCCAGGAGGTCATGAGTGGGCTGCGGCAGCCTGTGAGCGCTGTGC
AC
AGCGGGGATGGCTCCCATCGGCTCTTCATTCTAGAGAAGGAAGGCTACGTGAAGATTCTAACCCCAGA
A
GGAGAACTGTTCAAGGAGCCTTACTTGGACATTCACAAACTTGTTCAAAGTGGAATAAAGGGAGGAGAC
GAA
AGGGGCCTGCTAAGCCTGGCATTCCATCCCAATTACAAGAAAAATGGAAAGCTGTATGTGTCTTATA
CC
ACCAACCAGGAACGGTGGGCTATTGGGCCTCACGACCACATTCTTCGGGTTGTGGAATACACAGTATC
C
AGGAAAAACCCCCATCAAGTTGATGTGAGAACAGCCAGGGTGTTTCTGGAAGTCGCAGAGCTCCACCGA
AAG
CATCTTGGGGGACAGCTGCTCTTTGGTCCTGATGGCTTTTTGTACATCATCCTTGGGGATGGTATGA
TC
ACATTGGATGACATGGAAGAGATGGATGGGTTAAGTGACTTCACAGGCTCTGTGCTGAGGCTGGACGT
G
GACACCGACATGTGCAATGTGCCTTATTCCATACCTCGGAGTAACCCTCACTTCAACAGCACCAACCAG
CCC
CCAGAAGTATTTGCCCACGGCCTCCATGATCCAGGCAGATGTGCCGTGGATCGACATCCTACTGATA
TA
AACATCAATTTAACAATACTTTGCTCAGATTCCAACGGGAAAAACAGGTCATCAGCCAGAATCCTACA
G
ATAATAAAGGGAAGAGATTATGAAAGTGAGCCATCTCTTCTTGAATTCAAGCCATTCAGTAACGGCCCT
TTG
GTTGGTGGATTTGTTTACAGAGGCTGTCAGTCTGAAAGATTGTACGGAAGCTATGTGTTCGGAGATC
GC
AATGGGAATTTCTTAACCCTCCAGCAAAGCCCAGTGACCAAGCAATGGCAAGAAAAGCCGCTCTGCCT
G
GGTGCCAGCAGCTCCTGTCGAGGCTACTTTTCGGGTCACATCTTGGGATTTGGAGAAGATGAATTAGGA
GAG
GTTTACATTCTATCAAGCAGTAAGAGTATGACCCAGACTCACAATGGAAAACTCTACAAGATCGTAG
AC
CCCAAAAGACCTTTAATGCCTGAGGAATGCAGAGTCACAGTTCAACCTGCCCAGCCACTGACCTCCGA
T
TGCTCCCGGCTCTGTCGAAACGGCTACTACACCCCCACTGGCAAGTGCTGCTGCAGTCCCGGCTGGGAG
GGA
GACTTCTGCAGAATTGCCAAGTGTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGTCAGACCGAACA
AG
TGCCTCTGTAAAAAGGGCTATCTTGGTCCTCAATGTGAACAAGTGGACAGGAACGTCCGCAGAGTGAC
C
AGGGCAGGTATCCTTGATCAGATCATTGACATGACGTCTTACTTGCTGGATCTCACAAGTTACATTGTA
TAG


Translation (700 aa):
MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNPPKRLKRRDRRVMSQLELLSGGEILCG
G
FYPRVSCCLQSDSPGLGRLENK
IFSATNNSECSRLLEEIQCAPCSPHSQSLFYTPERDVLDGDLALPLL
C
KDYCKEFFYTCRGHIP
GLLQTTADEFCFYYARKDAGLCFPDFPRKQVRGPASNYLGQMEDYEKVGGISR
K
HKHNCLCVQEVMSGLRQPVSAVHSGDGSHRLFILEKEGYVKILTPEGELFKEPYLDIHKLVQSGIK
GGD
E
RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVS
RKNPHQVDVRTARVFLEVAELHR
K
HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL
SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQ
P
PEVFAHGLHDPG
RCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGRDYESEPSLLEFKPFSNGP
L
VGGFVYRGCQSERLYGSYVFGDRN
GNFLTLQQSPVTKQWQEKPLCLGASSSCRGYFSGHILGFGEDELG
E
VYILSSSKSMTQTHNGKLYKIVDPK
RPLMPEECRVTVQPAQPLTSDCSRLCRNGYYTPTGKCCCSPGWE
G
DFCRI
AKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNVRRVTRAGILDQIIDMTSYLLDLTSYIV



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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