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Report for CCDS15089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15089.1 Public Mus musculus 1 Scg2 23 108 98 CCDS HistoryNCBI Gene:20254Re-query CCDS DB by CCDS ID:15089.1Re-query CCDS DB by GeneID:20254See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049972.5 ENSMUSP00000062556.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049972.5Link to Ensembl Protein Viewer:ENSMUSP00000062556.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049972Re-query CCDS DB by Protein ID:ENSMUSP00000062556
Original member Current member NCBI NM_009129.3 NP_033155.1 Accepted alive Link to Nucleotide Sequence:NM_009129.3Link to Protein Sequence:NP_033155.1Re-query CCDS DB by Nucleotide ID:NM_009129Re-query CCDS DB by Protein ID:NP_033155Link to BLAST:NP_033155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033155.1 617 Q03517 617 100% 0 0

Chromosomal Locations for CCDS 15089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 79435151 79437004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCTGGAGCTAAGGCGTACCGACTTGGAGCAGTTCTGCTTCTTATCCACTTAATTTTCCTCATCTCTG
GAGCCGAAGCAGCTTCCTTCCAGCGAAACCAGCTGCTTCAGAAAGAACCAGACCTCAGATTGGAGAATGT
CCAAAAGTTTCCTAGTCCAGAAATGATCAGGGCTTTGGAGTACATAGAAAAGCTCAGGCAGCAAGCTCAC
AGAGAAGAAAGCAGCCCAGACTACAATCCCTACCAAGGCGTCTCTGTTCCTCTTCAACTCAAAGAAAACG
GAGAAGAAAGCCACTTGGCAGAGAGCTCAAGGGATGCACTGAGTGAAGACGAGTGGATGCGGATAATACT
CGAGGCTCTGAGGCAGGCTGAAAATGAGCCGCCATCTGCCCCCAAAGAGAACAAGCCCTATGCCTTGAAT
CTGGAGAAGAACTTCCCAGTGGACACGCCTGATGACTATGAGACTCAACAGTGGCCTGAGAGGAAACTCA
AGCACATGCGGTTCCCTCTCATGTATGAAGAGAATTCCAGAGAAAACCCCTTCAAACGCACAAATGAAAT
AGTCGAGGAACAATACACACCCCAAAGTCTTGCTACCCTGGAGTCTGTGTTCCAAGAGCTTGGGAAACTG
ACAGGGCCAAGCAACCAGAAGCGTGAGAGGGTTGACGAGGAACAAAAGCTGTACACAGATGATGAAGACG
ACGTGTACAAGACCAACAACATTGCCTATGAAGATGTCGTGGGGGGAGAAGACTGGAGCCCCATAGAGGA
GAAAATAGAGACTCAAACCCAGGAAGAGGTGAGAGACAGCAAAGAGAACACAGAAAAAAATGAACAAATC
AATGAAGAGATGAAACGTTCAGGGCAGTTGGGGCTCCCAGATGAAGAAAACCGGAGAGAGAGTAAAGACC
AACTCTCAGAGGATGCCTCCAAAGTTATCACCTACCTGAGAAGGTTAGTGAATGCTGTGGGCAGTGGGAG
GTCACAGAGTGGGCCAAATGGGGACAGGGCAGCCCGGCTTCTTCAGAAGCCCCTTGATTCTCAGTCTATT
TATCAGCTGATTGAAATCTCCAGGAATTTGCAGATACCCCCTGAAGATTTAATTGAGATGCTCAAAGCTG
GAGAGAAGCCAAATGGGTTGGTGGAGCCAGAGCAGGATCTGGAGCTTGCTGTTGACCTAGATGACATCCC
AGAGGCTGACCTAGACCGTCCAGACATGTTTCAAAGTAAGATGCTCTCCAAGGGTGGGTATCCCAAGGCA
CCTGGTCGTGGTATGGTAGAGGCCTTGCCTGATGGGCTGAGTGTCGAGGACATTTTAAATGTTTTAGGGA
TGGAGAATGTAGTAAATCAGAAGTCCCCATATTTTCCCAACCAATATAGCCAAGACAAGGCTCTGATGAG
GCTCCCTTATGGTCCTGGGAAATCTAGAGCCAACCAGATTCCCAAAGTAGCCTGGATCCCTGATGTTGAA
AGCAGACAAGCACCTTATGAAAATCTGAATGACCAAGAATTGGGAGAGTACTTAGCCAGGATGCTAGTTA
AGTACCCTGAGCTCCTGAATACCAACCAGCTGAAGAGAGTGCCCAGTCCAGTCTCCTCAGAGGATGACCT
CCAAGAAGAAGAGCAGCTCGAGCAGGCCATCAAGGAACATCTGGGGCCAGGAAGCTCCCAGGAAATGGAG
AGACTGGCCAAGGTGAGCAAAAGGATCCCCGTAGGATCCCTGAAGAATGAGGACACCCCAAACAGACAGT
ACCTGGATGAAGATATGCTCCTGAAAGTGCTGGAGTACCTCAACCAAGAGCAGGCAGAGCAGGGGAGGGA
GCATCTTGCCAAGCGGGCCATGGAAAACATGTAA

Translation (617 aa):
MAGAKAYRLGAVLLLIHLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALEYIEKLRQQAH
REESSPDYNPYQGVSVPLQLKENGEESHLAESSRDALSEDEWMRIILEALRQAENEPPSAPKENKPYALN
LEKNFPVDTPDDYETQQWPERKLKHMRFPLMYEENSRENPFKRTNEIVEEQYTPQSLATLESVFQELGKL
TGPSNQKRERVDEEQKLYTDDEDDVYKTNNIAYEDVVGGEDWSPIEEKIETQTQEEVRDSKENTEKNEQI
NEEMKRSGQLGLPDEENRRESKDQLSEDASKVITYLRRLVNAVGSGRSQSGPNGDRAARLLQKPLDSQSI
YQLIEISRNLQIPPEDLIEMLKAGEKPNGLVEPEQDLELAVDLDDIPEADLDRPDMFQSKMLSKGGYPKA
PGRGMVEALPDGLSVEDILNVLGMENVVNQKSPYFPNQYSQDKALMRLPYGPGKSRANQIPKVAWIPDVE
SRQAPYENLNDQELGEYLARMLVKYPELLNTNQLKRVPSPVSSEDDLQEEEQLEQAIKEHLGPGSSQEME
RLAKVSKRIPVGSLKNEDTPNRQYLDEDMLLKVLEYLNQEQAEQGREHLAKRAMENM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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