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Report for CCDS8162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8162.1 Public Homo sapiens 11 TBC1D10C 24 110 108 CCDS HistoryNCBI Gene:374403Re-query CCDS DB by CCDS ID:8162.1Re-query CCDS DB by GeneID:374403See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542590.2 ENSP00000443654.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542590.2Link to Ensembl Protein Viewer:ENSP00000443654.1Re-query CCDS DB by Nucleotide ID:ENST00000542590Re-query CCDS DB by Protein ID:ENSP00000443654
Original member Current member NCBI NM_001369496.1 NP_001356425.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369496.1Link to Protein Sequence:NP_001356425.1Re-query CCDS DB by Nucleotide ID:NM_001369496Re-query CCDS DB by Protein ID:NP_001356425Link to BLAST:NP_001356425.1
Original member Current member NCBI NM_001369497.1 NP_001356426.1 Accepted alive Link to Nucleotide Sequence:NM_001369497.1Link to Protein Sequence:NP_001356426.1Re-query CCDS DB by Nucleotide ID:NM_001369497Re-query CCDS DB by Protein ID:NP_001356426Link to BLAST:NP_001356426.1
Original member Current member NCBI NM_198517.4 NP_940919.1 Accepted alive Link to Nucleotide Sequence:NM_198517.4Link to Protein Sequence:NP_940919.1Re-query CCDS DB by Nucleotide ID:NM_198517Re-query CCDS DB by Protein ID:NP_940919Link to BLAST:NP_940919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356425.1 446 Q8IV04-1 446 100% 0 0
NP_001356426.1 446 Q8IV04-1 446 100% 0 0
NP_940919.1 446 Q8IV04-1 446 100% 0 0

Chromosomal Locations for CCDS 8162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67404203 67404354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67405085 67405184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67405399 67405506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67405595 67405701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67405903 67406017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67406627 67406692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67406827 67407016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67408979 67409133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67409407 67409754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGCCCAGGCCCTGGGGGAGGACCTGGTGCAGCCTCCCGAGCTGCAGGATGACTCCAGCTCCTTGGGGT
CCGACTCAGAGCTCAGCGGGCCTGGCCCATATCGCCAGGCCGACCGCTATGGATTCATTGGGGGCAGCTC
AGCAGAGCCAGGGCCGGGCCACCCACCTGCAGACCTCATCCGCCAACGGGAGATGAAGTGGGTGGAGATG
ACCTCGCACTGGGAGAAAACCATGTCCCGGCGGTACAAGAAGGTAAAGATGCAGTGCCGGAAAGGCATCC
CGTCTGCCCTGCGCGCCCGATGCTGGCCCCTGTTGTGTGGGGCCCATGTGTGCCAGAAGAACAGCCCTGG
CACCTATCAGGAGCTGGCAGAGGCCCCTGGAGACCCACAGTGGATGGAGACCATTGGCAGGGACCTGCAC
CGTCAATTCCCTCTGCACGAGATGTTTGTGTCGCCTCAGGGCCACGGGCAGCAGGGGCTCCTGCAGGTGC
TCAAGGCCTACACCCTGTATCGACCGGAGCAGGGCTACTGCCAGGCCCAGGGGCCCGTGGCTGCTGTGCT
GCTCATGCACCTGCCCCCAGAGGAGGCCTTCTGGTGCCTGGTGCAGATCTGTGAGGTCTACCTCCCTGGG
TACTACGGGCCCCACATGGAGGCTGTGCGGCTGGACGCCGAGGTGTTCATGGCCCTGCTGCGGCGGCTGC
TTCCGCACGTGCACAAGCACCTGCAGCAGGTGGGCGTCGGACCCCTGCTGTACCTGCCCGAGTGGTTCCT
GTGCCTCTTCGCCCGCTCCCTGCCCTTCCCCACAGTGCTGCGTGTCTGGGATGCCTTCCTCAGTGAGGGT
GCCAGAGTACTGTTCCGTGTGGGGCTGACACTGGTGCGCCTGGCGCTGGGCACTGCAGAGCAGCGAGGGG
CCTGCCCTGGCCTCCTGGAGACACTGGGAGCCCTTCGAGCCATCCCCCCCGCGCAGCTGCAGGAGGAGGC
CTTCATGTCACAGGTGCACAGCGTGGTGCTGTCAGAGCGGGACCTGCAGCGGGAGATCAAGGCCCAGCTG
GCCCAGCTGCCCGATTCCGCGCCGGGACCCCCGCCCCGGCCACAGGTCCGCCTCGCCGGGGCCCAAGCCA
TCTTTGAGGCCCAGCAGCTGGCAGGAGTGCGACGAGGCGCCAAGCCTGAGGTGCCTCGGATTGTGGTGCA
GCCCCCGGAGGAGCCCAGACCACCGCGGCGGAAACCCCAGACCCGCGGCAAGACTTTCCATGGGCTCCTG
ACTCGGGCCCGGGGCCCCCCCATCGAGGGGCCCCCCAGGCCCCAACGAGGCTCCACCTCCTTCCTGGACA
CCCGCTTCTGA

Translation (446 aa):
MAQALGEDLVQPPELQDDSSSLGSDSELSGPGPYRQADRYGFIGGSSAEPGPGHPPADLIRQREMKWVEM
TSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNSPGTYQELAEAPGDPQWMETIGRDLH
RQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQICEVYLPG
YYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEG
ARVLFRVGLTLVRLALGTAEQRGACPGLLETLGALRAIPPAQLQEEAFMSQVHSVVLSERDLQREIKAQL
AQLPDSAPGPPPRPQVRLAGAQAIFEAQQLAGVRRGAKPEVPRIVVQPPEEPRPPRRKPQTRGKTFHGLL
TRARGPPIEGPPRPQRGSTSFLDTRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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