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Report for CCDS92461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92461.1 Public Homo sapiens 18 RPL17 24 110 108 CCDS HistoryNCBI Gene:6139Re-query CCDS DB by CCDS ID:92461.1Re-query CCDS DB by GeneID:6139See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580210.5 ENSP00000463490.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580210.5Link to Ensembl Protein Viewer:ENSP00000463490.1Re-query CCDS DB by Nucleotide ID:ENST00000580210Re-query CCDS DB by Protein ID:ENSP00000463490
Original member Current member NCBI NM_001369560.1 NP_001356489.1 Accepted alive Link to Nucleotide Sequence:NM_001369560.1Link to Protein Sequence:NP_001356489.1Re-query CCDS DB by Nucleotide ID:NM_001369560Re-query CCDS DB by Protein ID:NP_001356489Link to BLAST:NP_001356489.1
Original member Current member NCBI NM_001369561.1 NP_001356490.1 Accepted alive Link to Nucleotide Sequence:NM_001369561.1Link to Protein Sequence:NP_001356490.1Re-query CCDS DB by Nucleotide ID:NM_001369561Re-query CCDS DB by Protein ID:NP_001356490Link to BLAST:NP_001356490.1

Chromosomal Locations for CCDS 92461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 49488519 49488566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49489359 49489550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49490454 49490552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49490793 49490927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49491405 49491445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 49491626 49491635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGAGTTACTCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTC
AGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTG
TGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAATGGGGCTGGACACAA
GGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAAC
TTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCG
CCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTT
ACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGATATCCCAGAAGA
AACTGAAGAAACAAAAACTTATGGCACGGGAGTAA

Translation (174 aa):
MSYSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQ
GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL
TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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