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Report for CCDS78119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78119.1 Public Homo sapiens 6 ZSCAN26 24 110 108 CCDS HistoryNCBI Gene:7741Re-query CCDS DB by CCDS ID:78119.1Re-query CCDS DB by GeneID:7741See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78119.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000623276.3 ENSP00000485228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623276.3Link to Ensembl Protein Viewer:ENSP00000485228.1Re-query CCDS DB by Nucleotide ID:ENST00000623276Re-query CCDS DB by Protein ID:ENSP00000485228
Original member Current member NCBI NM_001111039.3 NP_001104509.1 Accepted alive Link to Nucleotide Sequence:NM_001111039.3Link to Protein Sequence:NP_001104509.1Re-query CCDS DB by Nucleotide ID:NM_001111039Re-query CCDS DB by Protein ID:NP_001104509Link to BLAST:NP_001104509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104509.1 478 Q16670-1 478 100% 0 0

Chromosomal Locations for CCDS 78119.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28271920 28272336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28272670 28272787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28276195 28277096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCAACAGCATTGGTGAGTGCCCATTCCCTGGCTCCCCTGAATCTGAAGAAGGAGGGGCTTCGGGTAG
TGAGGGAGGATCACTACTCTACTTGGGAACAGGGATTCAAGCTGCAAGGAAACAGTAAAGGCCTTGGACA
GGAGCCATTGTGCAAACAATTCAGGCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGT
CGGCTCCGGGAGCTCTGTCAACAGTGGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGC
TGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGA
GAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAGGAC
CCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGC
AGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGGGTGAGGAGACAAGGATTGAGAATGG
GAAGCTTATTGTAGTAACAGACTCTTGTGGAAGAGTAGAGTCATCTGGGAAAATATCTGAACCCATGGAG
GCTCATAATGAGGGCTCTAACTTGGAAAGGCATCAGGCCAAGCCCAAAGAGAAGATTGAGTATAAATGCT
CAGAACGTGAGCAGAGATTCATCCAGCACTTGGACCTGATTGAACATGCGAGTACACACACGGGAAAGAA
ACTCTGCGAGTCTGATGTGTGTCAGAGTTCCAGTCTTACAGGACATAAGAAAGTCCTCTCTAGAGAGAAA
GGTCATCAGTGTCATGAGTGTGGGAAAGCCTTTCAGAGGAGTTCACACCTCGTCAGACATCAGAAAATCC
ATCTTGGTGAGAAGCCTTATCAGTGCAATGAGTGTGGCAAAGTCTTTAGCCAGAATGCAGGCCTTTTGGA
ACATCTCAGAATTCATACTGGAGAGAAACCTTATCTATGTATCCATTGTGGAAAAAATTTTAGGCGCAGC
TCTCACCTTAATCGACATCAGAGAATTCACAGTCAGGAGGAGCCCTGTGAGTGCAAGGAGTGTGGAAAAA
CCTTTAGTCAGGCCTTACTCCTCACCCACCATCAGAGAATCCATAGTCACTCCAAAAGCCATCAATGTAA
CGAGTGTGGAAAAGCTTTCAGTTTGACCTCAGACCTTATTCGACACCACAGAATTCATACTGGAGAAAAA
CCTTTCAAGTGTAACATATGCCAGAAAGCCTTCCGACTAAACTCACACCTTGCTCAGCATGTAAGAATCC
ACAATGAAGAAAAACCCTATCAGTGTAGTGAATGTGGAGAAGCCTTCAGGCAAAGGTCAGGTCTTTTTCA
ACATCAGAGATATCACCACAAAGACAAACTGGCTTGA

Translation (478 aa):
MATALVSAHSLAPLNLKKEGLRVVREDHYSTWEQGFKLQGNSKGLGQEPLCKQFRQLRYEETTGPREALS
RLRELCQQWLQPETHTKEQILELLVLEQFLIILPKELQARVQEHHPESREDVVVVLEDLQLDLGETGQQD
PDQPKKQKILVEEMAPLKGVQEQQVRHECEVTKPEKEKGEETRIENGKLIVVTDSCGRVESSGKISEPME
AHNEGSNLERHQAKPKEKIEYKCSEREQRFIQHLDLIEHASTHTGKKLCESDVCQSSSLTGHKKVLSREK
GHQCHECGKAFQRSSHLVRHQKIHLGEKPYQCNECGKVFSQNAGLLEHLRIHTGEKPYLCIHCGKNFRRS
SHLNRHQRIHSQEEPCECKECGKTFSQALLLTHHQRIHSHSKSHQCNECGKAFSLTSDLIRHHRIHTGEK
PFKCNICQKAFRLNSHLAQHVRIHNEEKPYQCSECGEAFRQRSGLFQHQRYHHKDKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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