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Report for CCDS35949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35949.1 Public Mus musculus 10 Adarb1 23 108 98 CCDS HistoryNCBI Gene:110532Re-query CCDS DB by CCDS ID:35949.1Re-query CCDS DB by GeneID:110532See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020496.13 ENSMUSP00000020496.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020496.13Link to Ensembl Protein Viewer:ENSMUSP00000020496.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020496Re-query CCDS DB by Protein ID:ENSMUSP00000020496
Original member Current member NCBI NM_130895.3 NP_570965.2 Accepted alive Link to Nucleotide Sequence:NM_130895.3Link to Protein Sequence:NP_570965.2Re-query CCDS DB by Nucleotide ID:NM_130895Re-query CCDS DB by Protein ID:NP_570965Link to BLAST:NP_570965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570965.2 701 Q91ZS8-2 701 100% 0 0

Chromosomal Locations for CCDS 35949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 77294782 77294961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77295698 77295876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77303173 77303354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77311106 77311274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77312378 77312526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77313405 77313573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77317236 77317350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77321649 77322583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 77325866 77325893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGATATAGAAGATGAAGAGAATATGAGTTCCAGCAGCACTGATATTAAAGAAAACCGCAATCTGGACA
ACATGCCCCCCAAGGACAGCAGCACACCTGGGCCTGGCGAGGGTATTCCGCTCTCCAACGGGGGTGGTGG
TAGCACCAGCAGGAAGCGGCCCCTGGAGGAGGGCAGCAATGGTCACTCCAAGTACCGCCTGAAGAAGCGA
AGGAAAACACCAGGGCCTGTTCTGCCCAAGAACGCCCTGATGCAGCTGAACGAGATCAAACCTGGCTTAC
AGTACATGCTGCTGTCCCAGACAGGACCCGTGCATGCACCTCTGTTTGTCATGTCTGTGGAGGTAAACGG
GCAGGTTTTTGAGGGCTCTGGCCCTACAAAGAAAAAGGCAAAACTCCATGCTGCTGAGAAGGCCCTGAGG
TCTTTTGTCCAGTTTCCCAACGCCTCCGAGGCCCACCTAGCCATGGGAAGGACCCTCTCTGTGAACACAG
ACTTCACGTCTGACCAGGCTGACTTCCCTGACACACTCTTCAATGGCTTCGAGACTCCAGACAAGTCAGA
GCCACCCTTCTACGTAGGCTCCAACGGGGATGACTCGTTCAGCTCAAGTGGAGATGTCAGCCTATCGGCC
TCCCCAGTGCCTGCCAGCCTTACCCAGCCTCCTCTGCCCATCCCACCACCATTCCCACCCCCAAGTGGGA
AGAATCCCGTGATGATCTTGAATGAGCTACGCCCAGGGCTGAAGTATGACTTCCTCTCTGAGAGTGGGGA
GAGCCACGCCAAGAGCTTCGTCATGTCCGTGGTGGTAGATGGCCAGTTCTTTGAGGGCTCAGGAAGAAAC
AAGAAGCTTGCCAAGGCCCGGGCTGCACAGTCTGCCTTGGCTACTGTCTTCAATTTGCACTTGGACCAAA
CACCATCTCGCCAGCCTGTCCTCAGTGAGGGTCTTCAGTTGCATTTGCCACAGGTATTGGCAGATGCTGT
CTCCCGCCTGGTCCTGGGTAAGTTCAGTGACCTGACAGACAACTTTTCCTCCCCTCATGCACGAAGGAAA
GTGCTCTCTGGAGTAGTGATGACCACAGGTACAGATGTCAAAGATGCCAAGGTGATAAGTGTTTCGACAG
GGACGAAGTGTATCAACGGTGAATACATGAGTGACCGTGGCCTCGCACTCAATGACTGCCACGCAGAGAT
AATCTCCCGAAGGTCCCTGCTCAGGTTTCTTTATGCACAGCTCGAGCTTTATTTAAATAACAAAGAAGAC
CAGAAAAAGTCCATATTTCAGAAGTCAGAGCGGGGTGGGTTCCGGCTGAAGGATACCGTGCAGTTCCACC
TGTACATCAGCACCTCGCCCTGCGGAGACGCCAGAATATTCTCTCCCCACGAGCCCGTGCTAGAGGAACC
AGCAGATAGACATCCGAATCGCAAAGCAAGGGGACAGCTACGGACGAAAATAGAGTCTGGCGAGGGGACA
ATCCCTGTGCGCTCAAATGCCAGCATCCAGACCTGGGACGGGGTGCTGCAGGGGGAACGGCTGCTCACCA
TGTCCTGCAGTGACAAGATAGCACGCTGGAACGTGGTGGGCATCCAGGGGTCCCTGCTCAGCATTTTCGT
GGAACCCATCTACTTCTCCAGCATCATCTTGGGCAGCCTGTACCACGGGGACCACCTCTCCAGGGCCATG
TACCAGCGGATCTCCAACATAGAGGACCTGCCACCGCTCTACACTCTCAACAAGCCCCTGCTCAGCGGCA
TCAGCAATGCAGAGGCACGGCAGCCAGGGAAGGCACCCAACTTCAGTGTCAACTGGACAGTGGGTGACGC
CACCATTGAGGTCATCAATGCCACAACAGGGAAGGATGAGCTTGGCCGCCCATCCCGCCTGTGTAAGCAC
GCGCTGTACTGTCGCTGGATGCGTGTACACGGCAAGGTTCCCCCCCACCTGCTGCGCACCAAGATCACTA
AGCCTACCACATACCACGAGTCCAAGCTGGCAGCGAGGGAGTACCAGGCTGCCAAGGCCCGTCTGTTCAC
TGCCTTCATCAAGGCGGGGCTGGGCGCCTGGGTGGAGAAGCCCACAGAGCAGGACCAGTTCTCCTTCACT
CCCTGA

Translation (701 aa):
MDIEDEENMSSSSTDIKENRNLDNMPPKDSSTPGPGEGIPLSNGGGGSTSRKRPLEEGSNGHSKYRLKKR
RKTPGPVLPKNALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALR
SFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSA
SPVPASLTQPPLPIPPPFPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRN
KKLAKARAAQSALATVFNLHLDQTPSRQPVLSEGLQLHLPQVLADAVSRLVLGKFSDLTDNFSSPHARRK
VLSGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYAQLELYLNNKED
QKKSIFQKSERGGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLEEPADRHPNRKARGQLRTKIESGEGT
IPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAM
YQRISNIEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDATIEVINATTGKDELGRPSRLCKH
ALYCRWMRVHGKVPPHLLRTKITKPTTYHESKLAAREYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSFT
P


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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