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Report for CCDS5224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5224.1 Public Homo sapiens 6 RAET1L 24 110 108 CCDS HistoryNCBI Gene:154064Re-query CCDS DB by CCDS ID:5224.1Re-query CCDS DB by GeneID:154064See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286380.2 ENSP00000286380.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286380.2Link to Ensembl Protein Viewer:ENSP00000286380.2Re-query CCDS DB by Nucleotide ID:ENST00000286380Re-query CCDS DB by Protein ID:ENSP00000286380
Original member Current member EBI ENST00000367341.6 ENSP00000356310.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367341.6Link to Ensembl Protein Viewer:ENSP00000356310.1Re-query CCDS DB by Nucleotide ID:ENST00000367341Re-query CCDS DB by Protein ID:ENSP00000356310
Original member Current member NCBI NM_130900.3 NP_570970.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130900.3Link to Protein Sequence:NP_570970.2Re-query CCDS DB by Nucleotide ID:NM_130900Re-query CCDS DB by Protein ID:NP_570970Link to BLAST:NP_570970.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570970.2 246 Q5VY80 246 100% 0 0

Chromosomal Locations for CCDS 5224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 150020130 150020239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150020905 150021186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150021980 150022243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 150025387 150025471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGCAGCAGCCGCCATCCCAGCTTTGCTTCTGTGCCTCCCGCTTCTGTTCCTGCTGTTCGGCTGGTCCC
GGGCTAGGCGAGACGACCCTCACTCTCTTTGCTATGACATCACCGTCATCCCTAAGTTCAGACCTGGACC
ACGGTGGTGTGCGGTTCAAGGCCAGGTGGATGAAAAGACTTTTCTTCACTATGACTGTGGCAACAAGACA
GTCACACCCGTCAGTCCCCTGGGGAAGAAACTAAATGTCACAATGGCCTGGAAAGCACAGAACCCAGTAC
TGAGAGAGGTGGTGGACATACTTACAGAGCAACTGCTTGACATTCAGCTGGAGAATTACACACCCAAGGA
ACCCCTCACCCTGCAGGCAAGGATGTCTTGTGAGCAGAAAGCTGAAGGACACAGCAGTGGATCTTGGCAG
TTCAGTATCGATGGACAGACCTTCCTACTCTTTGACTCAGAGAAGAGAATGTGGACAACGGTTCATCCTG
GAGCCAGAAAGATGAAAGAAAAGTGGGAGAATGACAAGGATGTGGCCATGTCCTTCCATTACATCTCAAT
GGGAGACTGCATAGGATGGCTTGAGGACTTCTTGATGGGCATGGACAGCACCCTGGAGCCAAGTGCAGGA
GCACCACTCGCCATGTCCTCAGGCACAACCCAACTCAGGGCCACAGCCACCACCCTCATCCTTTGCTGCC
TCCTCATCATCCTCCCCTGCTTCATCCTCCCTGGCATCTGA

Translation (246 aa):
MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGNKT
VTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLTLQARMSCEQKAEGHSSGSWQ
FSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAMSFHYISMGDCIGWLEDFLMGMDSTLEPSAG
APLAMSSGTTQLRATATTLILCCLLIILPCFILPGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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