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Report for CCDS1663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1663.1 Public Homo sapiens 2 ITGB1BP1 24 110 108 CCDS HistoryNCBI Gene:9270Re-query CCDS DB by CCDS ID:1663.1Re-query CCDS DB by GeneID:9270See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1663.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238091.8 ENSP00000238091.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000238091.8Link to Ensembl Protein Viewer:ENSP00000238091.4Re-query CCDS DB by Nucleotide ID:ENST00000238091Re-query CCDS DB by Protein ID:ENSP00000238091
Original member Current member EBI ENST00000488451.5 ENSP00000419524.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488451.5Link to Ensembl Protein Viewer:ENSP00000419524.1Re-query CCDS DB by Nucleotide ID:ENST00000488451Re-query CCDS DB by Protein ID:ENSP00000419524
Original member Current member NCBI NM_001369747.1 NP_001356676.1 Accepted alive Link to Nucleotide Sequence:NM_001369747.1Link to Protein Sequence:NP_001356676.1Re-query CCDS DB by Nucleotide ID:NM_001369747Re-query CCDS DB by Protein ID:NP_001356676Link to BLAST:NP_001356676.1
Original member Current member NCBI NM_001369750.1 NP_001356679.1 Accepted alive Link to Nucleotide Sequence:NM_001369750.1Link to Protein Sequence:NP_001356679.1Re-query CCDS DB by Nucleotide ID:NM_001369750Re-query CCDS DB by Protein ID:NP_001356679Link to BLAST:NP_001356679.1
Original member Current member NCBI NM_022334.5 NP_071729.1 Accepted alive Link to Nucleotide Sequence:NM_022334.5Link to Protein Sequence:NP_071729.1Re-query CCDS DB by Nucleotide ID:NM_022334Re-query CCDS DB by Protein ID:NP_071729Link to BLAST:NP_071729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356676.1 150 O14713-2 150 100% 0 0
NP_001356679.1 150 O14713-2 150 100% 0 0
NP_071729.1 150 O14713-2 150 100% 0 0

Chromosomal Locations for CCDS 1663.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9406834 9406905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9408113 9408205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9412269 9412405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9414178 9414256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9418626 9418697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTTTCGCAAGGGCAAAAAACGACACAGTAGTAGCAGTTCCCAAAGTAGCGAAATCAGTACTAAGAGCA
AGTCTGTGGATTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCAC
CAAAAGCTCAGGACAAAGCAACAATAATTCAGATACCTGTGCAGAATTTCGAATAAAATATGTTGGTGCC
ATTGAGAAACTGAAACTCTCCGAGGGAAAAGGCCTTGAAGGGCCATTAGACCTGATAAATTATATAGACG
TTGCCCAGCAAGATGGAAAGTTGCCTTTTGTTCCTCCGGAGGAAGAATTTATTATGGGAGTTTCCAAGTA
TGGCATAAAAGTATCAACATCAGATCAATATGAACAAGCACAAGCCATTTGCAAGGTTTTATCCACCGCT
TTTGACTCTGTATTAACATCTGAGAAACCCTGA

Translation (150 aa):
MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGA
IEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYEQAQAICKVLSTA
FDSVLTSEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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