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Report for CCDS23594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23594.1 Public Mus musculus 9 Ccr4 23 108 98 CCDS HistoryNCBI Gene:12773Re-query CCDS DB by CCDS ID:23594.1Re-query CCDS DB by GeneID:12773See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054414.4 ENSMUSP00000062677.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054414.4Link to Ensembl Protein Viewer:ENSMUSP00000062677.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054414Re-query CCDS DB by Protein ID:ENSMUSP00000062677
Original member Current member EBI ENSMUST00000215425.1 ENSMUSP00000150002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215425.1Link to Ensembl Protein Viewer:ENSMUSP00000150002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215425Re-query CCDS DB by Protein ID:ENSMUSP00000150002
Original member Current member NCBI NM_009916.2 NP_034046.2 Accepted alive Link to Nucleotide Sequence:NM_009916.2Link to Protein Sequence:NP_034046.2Re-query CCDS DB by Nucleotide ID:NM_009916Re-query CCDS DB by Protein ID:NP_034046Link to BLAST:NP_034046.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034046.2 360 P51680 360 100% 0 0

Chromosomal Locations for CCDS 23594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114491913 114492995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGAATGCCACAGAGGTCACAGACACCACCCAGGATGAAACTGTGTACAATAGTTATTACTTCTACGAAA
GCATGCCAAAGCCTTGCACCAAGGAAGGTATCAAGGCATTTGGGGAGGTCTTCCTGCCTCCTCTCTACTC
CTTGGTCTTCTTGTTGGGTCTGTTTGGAAATTCTGTTGTGGTTCTGGTCCTGTTCAAATACAAGAGGCTC
AAGTCCATGACGGACGTGTACCTGCTGAACCTGGCCATCTCGGATTTGCTGTTCGTCCTGTCCCTCCCAT
TCTGGGGCTACTACGCCGCCGACCAGTGGGTTTTTGGACTAGGTCTGTGCAAGATCGTTTCATGGATGTA
CCTGGTGGGCTTCTACAGCGGCATCTTCTTCATCATGCTCATGAGCATAGACAGATACCTGGCCATCGTG
CACGCGGTATTCTCCTTGAAGGCAAGGACCCTGACCTATGGCGTCATCACCAGCCTGATCACGTGGTCAG
TGGCTGTGTTTGCCTCCCTCCCAGGCCTCTTGTTCAGCACTTGCTACACAGAGCACAACCACACGTACTG
CAAAACCCAGTACTCGGTCAACTCGACGACGTGGAAAGTCCTCAGCTCCCTGGAGATCAACGTCCTGGGG
CTGCTTATCCCCCTGGGCATCATGCTGTTTTGTTATTCCATGATCATTAGGACTCTGCAACACTGCAAGA
ATGAGAAGAAGAACAGAGCAGTGCGCATGATCTTCGCCGTGGTGGTCCTCTTCCTCGGCTTCTGGACGCC
GTACAACGTGGTGCTTTTCCTGGAGACGCTGGTGGAGCTTGAAGTCCTTCAGGACTGCACCTTGGAGAGG
TACCTAGACTACGCCATCCAGGCTACAGAAACCCTGGCCTTCATTCACTGCTGCCTTAACCCCGTCATTT
ACTTCTTTCTCGGGGAGAAATTCCGCAAGTACATCACCCAACTCTTCAGAACATGCCGGGGTCCCCTCGT
GCTCTGCAAACACTGTGACTTCCTCCAGGTCTACTCGGCTGACATGTCCAGCTCCTCTTACACGCAGTCC
ACTGTGGATCATGACTTCCGTGACGCTTTGTAA

Translation (360 aa):
MNATEVTDTTQDETVYNSYYFYESMPKPCTKEGIKAFGEVFLPPLYSLVFLLGLFGNSVVVLVLFKYKRL
KSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKIVSWMYLVGFYSGIFFIMLMSIDRYLAIV
HAVFSLKARTLTYGVITSLITWSVAVFASLPGLLFSTCYTEHNHTYCKTQYSVNSTTWKVLSSLEINVLG
LLIPLGIMLFCYSMIIRTLQHCKNEKKNRAVRMIFAVVVLFLGFWTPYNVVLFLETLVELEVLQDCTLER
YLDYAIQATETLAFIHCCLNPVIYFFLGEKFRKYITQLFRTCRGPLVLCKHCDFLQVYSADMSSSSYTQS
TVDHDFRDAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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