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Report for CCDS29539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29539.1 Public Mus musculus 19 Chrm1 23 108 98 CCDS HistoryNCBI Gene:12669Re-query CCDS DB by CCDS ID:29539.1Re-query CCDS DB by GeneID:12669See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035444.9 ENSMUSP00000042632.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035444.9Link to Ensembl Protein Viewer:ENSMUSP00000042632.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035444Re-query CCDS DB by Protein ID:ENSMUSP00000042632
Original member Current member EBI ENSMUST00000163785.1 ENSMUSP00000126103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163785.1Link to Ensembl Protein Viewer:ENSMUSP00000126103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163785Re-query CCDS DB by Protein ID:ENSMUSP00000126103
Original member Current member NCBI NM_001112697.1 NP_001106167.1 Accepted alive Link to Nucleotide Sequence:NM_001112697.1Link to Protein Sequence:NP_001106167.1Re-query CCDS DB by Nucleotide ID:NM_001112697Re-query CCDS DB by Protein ID:NP_001106167Link to BLAST:NP_001106167.1
Original member Current member NCBI NM_007698.3 NP_031724.2 Accepted alive Link to Nucleotide Sequence:NM_007698.3Link to Protein Sequence:NP_031724.2Re-query CCDS DB by Nucleotide ID:NM_007698Re-query CCDS DB by Protein ID:NP_031724Link to BLAST:NP_031724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106167.1 460 P12657 460 100% 0 0
NP_031724.2 460 P12657 460 100% 0 0

Chromosomal Locations for CCDS 29539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8677933 8679315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGAACACCTCAGTGCCCCCTGCTGTCAGTCCCAACATCACCGTCTTGGCACCAGGAAAGGGTCCCTGGC
AAGTGGCATTCATCGGGATCACCACAGGCCTCCTGTCTCTGGCTACAGTGACAGGCAACCTGCTGGTGCT
CATCTCCTTCAAGGTCAACACAGAGCTCAAGACAGTCAACAACTACTTCCTGCTGAGCCTGGCCTGTGCT
GATCTCATCATTGGCACTTTCTCCATGAACCTCTATACCACATACCTGCTCATGGGCCACTGGGCTCTGG
GCACACTGGCCTGTGACCTCTGGCTGGCCCTGGACTATGTGGCCAGCAACGCCTCTGTCATGAATCTTCT
GCTCATCAGCTTTGACCGTTACTTCTCAGTGACCCGACCCCTGAGCTACCGAGCCAAGCGCACTCCCCGC
AGGGCAGCTCTGATGATTGGCCTCGCGTGGTTGGTTTCCTTCGTTCTCTGGGCCCCAGCCATCCTCTTCT
GGCAATACCTAGTTGGGGAGCGGACAGTGCTGGCTGGGCAGTGCTACATCCAGTTCCTCTCCCAACCCAT
CATCACTTTTGGCACAGCCATGGCCGCCTTCTACCTCCCTGTCACAGTCATGTGTACGCTGTACTGGCGC
ATCTACCGGGAGACAGAAAACCGAGCCCGGGAGCTAGCAGCCCTACAGGGCTCTGAGACACCAGGCAAAG
GTGGTGGCAGCAGCAGCAGCTCAGAGAGGTCACAGCCAGGAGCTGAAGGCTCACCCGAGTCACCTCCAGG
CCGCTGCTGTCGCTGTTGCCGGGCACCCAGACTTCTGCAGGCCTACAGCTGGAAAGAAGAAGAGGAAGAG
GATGAAGGCTCCATGGAGTCCCTCACATCCTCTGAAGGTGAGGAGCCTGGCTCAGAAGTGGTGATCAAGA
TGCCTATGGTAGATCCTGAGGCACAGGCACCCACCAAGCAGCCTCCCAAAAGCTCCCCAAATACAGTCAA
GAGGCCCACCAAGAAAGGCCGAGACCGAGGCGGCAAAGGCCAAAAACCCCGAGGGAAGGAACAACTGGCC
AAGAGAAAGACCTTCTCACTGGTCAAGGAGAAGAAGGCAGCTCGGACCCTGAGTGCCATCCTGCTGGCCT
TCATCCTCACCTGGACACCATATAACATCATGGTGCTGGTGTCTACATTCTGCAAGGACTGTGTTCCAGA
AACCCTATGGGAGCTGGGCTACTGGCTTTGCTACGTCAACAGCACTGTCAACCCCATGTGCTACGCACTC
TGCAACAAAGCCTTCCGGGACACTTTCCGCCTGCTGTTGCTCTGCCGCTGGGACAAGCGGCGCTGGCGCA
AAATCCCCAAGCGCCCTGGCTCTGTGCACCGCACCCCCTCCCGCCAATGCTAA

Translation (460 aa):
MNTSVPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACA
DLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPR
RAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQPIITFGTAMAAFYLPVTVMCTLYWR
IYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPESPPGRCCRCCRAPRLLQAYSWKEEEEE
DEGSMESLTSSEGEEPGSEVVIKMPMVDPEAQAPTKQPPKSSPNTVKRPTKKGRDRGGKGQKPRGKEQLA
KRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTVNPMCYAL
CNKAFRDTFRLLLLCRWDKRRWRKIPKRPGSVHRTPSRQC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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