NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6445.1 Public Homo sapiens 9 DMRT2 24 110 108 CCDS HistoryNCBI Gene:10655Re-query CCDS DB by CCDS ID:6445.1Re-query CCDS DB by GeneID:10655See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259622.10 ENSP00000259622.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259622.10Link to Ensembl Protein Viewer:ENSP00000259622.6Re-query CCDS DB by Nucleotide ID:ENST00000259622Re-query CCDS DB by Protein ID:ENSP00000259622
Original member Current member EBI ENST00000382255.7 ENSP00000371690.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382255.7Link to Ensembl Protein Viewer:ENSP00000371690.3Re-query CCDS DB by Nucleotide ID:ENST00000382255Re-query CCDS DB by Protein ID:ENSP00000371690
Original member Current member EBI ENST00000412350.6 ENSP00000397494.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412350.6Link to Ensembl Protein Viewer:ENSP00000397494.2Re-query CCDS DB by Nucleotide ID:ENST00000412350Re-query CCDS DB by Protein ID:ENSP00000397494
Original member Current member EBI ENST00000635183.1 ENSP00000489226.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635183.1Link to Ensembl Protein Viewer:ENSP00000489226.1Re-query CCDS DB by Nucleotide ID:ENST00000635183Re-query CCDS DB by Protein ID:ENSP00000489226
Original member Current member NCBI NM_001130865.3 NP_001124337.1 Accepted alive Link to Nucleotide Sequence:NM_001130865.3Link to Protein Sequence:NP_001124337.1Re-query CCDS DB by Nucleotide ID:NM_001130865Re-query CCDS DB by Protein ID:NP_001124337Link to BLAST:NP_001124337.1
Original member Current member NCBI NM_001370531.1 NP_001357460.1 Accepted alive Link to Nucleotide Sequence:NM_001370531.1Link to Protein Sequence:NP_001357460.1Re-query CCDS DB by Nucleotide ID:NM_001370531Re-query CCDS DB by Protein ID:NP_001357460Link to BLAST:NP_001357460.1
Original member Current member NCBI NM_001370533.1 NP_001357462.1 Accepted alive Link to Nucleotide Sequence:NM_001370533.1Link to Protein Sequence:NP_001357462.1Re-query CCDS DB by Nucleotide ID:NM_001370533Re-query CCDS DB by Protein ID:NP_001357462Link to BLAST:NP_001357462.1
Original member Current member NCBI NM_001387557.1 NP_001374486.1 Accepted alive Link to Nucleotide Sequence:NM_001387557.1Link to Protein Sequence:NP_001374486.1Re-query CCDS DB by Nucleotide ID:NM_001387557Re-query CCDS DB by Protein ID:NP_001374486Link to BLAST:NP_001374486.1
Original member Current member NCBI NM_006557.7 NP_006548.1 Accepted alive Link to Nucleotide Sequence:NM_006557.7Link to Protein Sequence:NP_006548.1Re-query CCDS DB by Nucleotide ID:NM_006557Re-query CCDS DB by Protein ID:NP_006548Link to BLAST:NP_006548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124337.1 226 Q9Y5R5-2 226 100% 0 0
NP_001357460.1 226 Q9Y5R5-2 226 100% 0 0
NP_001357462.1 226 Q9Y5R5-2 226 100% 0 0
NP_001374486.1 226 Q9Y5R5-2 226 100% 0 0
NP_006548.1 226 Q9Y5R5-2 226 100% 0 0

Chromosomal Locations for CCDS 6445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 1051614 1052138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 1053722 1053824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 1055722 1055774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCCGACCCGCAGGCTGGCTCCGCGGCCGGGGACTGGGAGATCGATGTCGAGAGCCTGGAGCTGGAAG
AGGACGTCTGCGGGGCGCCGCGGTCCACGCCCCCCGGGCCCAGCCCGCCGCCGGCGGACGGGGACTGCGA
GGACGACGAAGATGACGACGGGGTGGACGAAGACGCGGAAGAAGAGGGCGACGGCGAGGAGGCAGGCGCG
TCCCCCGGGATGCCCGGCCAGCCGGAGCAGCGGGGGGGACCGCAGCCGAGGCCGCCGCTCGCGCCTCAGG
CCTCACCCGCCGGCACCGGTCCCCGAGAGCGCTGCACTCCCGCGGGCGGCGGCGCGGAGCCGCGCAAGCT
GAGCCGCACGCCCAAGTGCGCGCGCTGCCGCAACCACGGCGTGGTGTCCTGCCTGAAGGGCCACAAGCGC
TTCTGTCGCTGGCGCGACTGCCAGTGCGCCAACTGCCTGCTGGTGGTGGAGCGGCAGCGCGTCATGGCCG
CCCAGGTGGCGCTCCGGAGGCAGCAGGCCACCGAGGACAAGAAGGGGCTTTCCGGGAAACAGAATAATTT
CGAGCGCAAAGCTGTGTACCAGAGGCAAGTCAGAGCCCCCAGTTTGCTGGCCAAAAGCATTTTAGAAGTT
CTCCTTGGATTATTCTACAGCTATTATGTGTACATAATGAACCATCTTTAG

Translation (226 aa):
MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAEEEGDGEEAGA
SPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARCRNHGVVSCLKGHKR
FCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAPSLLAKSILEV
LLGLFYSYYVYIMNHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH