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Report for CCDS26787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26787.1 Public Mus musculus 13 Itga2 23 108 98 CCDS HistoryNCBI Gene:16398Re-query CCDS DB by CCDS ID:26787.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056117.9 ENSMUSP00000053891.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056117.9Link to Ensembl Protein Viewer:ENSMUSP00000053891.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056117Re-query CCDS DB by Protein ID:ENSMUSP00000053891
Original member NCBI NM_008396.3 NP_032422.2 Updated not alive Link to Nucleotide Sequence:NM_008396.3Link to Protein Sequence:NP_032422.2Re-query CCDS DB by Nucleotide ID:NM_008396Re-query CCDS DB by Protein ID:NP_032422
Current member NCBI NM_008396.4 NP_032422.2 Accepted alive Link to Nucleotide Sequence:NM_008396.4Link to Protein Sequence:NP_032422.2Re-query CCDS DB by Nucleotide ID:NM_008396Re-query CCDS DB by Protein ID:NP_032422Link to BLAST:NP_032422.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032422.2 1178 Q62469 1178 100% 0 0

Chromosomal Locations for CCDS 26787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 114836485 114836565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114837093 114837209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114839496 114839585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114843415 114843528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114845833 114845937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114847944 114848054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114849319 114849421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114853702 114853785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114853872 114853948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114854420 114854512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114856131 114856272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114856658 114856740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114857279 114857389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114859528 114859679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114862274 114862413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114865311 114865447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114866156 114866359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114868202 114868345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114869194 114869339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114870488 114870626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114873254 114873330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114875058 114875223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114875459 114875609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114877621 114877769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114880549 114880676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114880931 114881045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114884436 114884527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114886580 114886689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114900415 114900532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114931876 114931933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3537 nt):
ATGGGACCGGGACAGGCAGGGGGCGCGCTCCTGCTGCGGCTGCTAATGCTAGTTCAAGGTATTTTGAATT
GTCTGGCGTATAATGTTGGCCTCCCAGGAGCGAAAATATTTTCCGGGCCTTCAAGTGAACAGTTTGGGTA
TTCAGTACAGCAGCTTACGAACCCACAAGGCAACTGGCTACTGGTTGGTTCACCGTGGAGTGGCTTCCCT
GAGAACCGAATGGGAGATGTGTACAAGTGCCCTGTGGACCTACCCACTGCCACCTGTGAAAAGCTGAATC
TGCAAAATTCAGCAAGCATCTCAAATGTTACCGAGATAAAGACCAACATGAGCCTGGGATTGACCCTCAC
CAGGAATCCGGGGACCGGAGGCTTTCTAACCTGTGGTCCTCTCTGGGCACATCAGTGTGGAAATCAGTAT
TATGCAACTGGGATCTGTTCTGATGTTAGTCCAGACTTTCAGTTCTTGACCAGCTTTTCACCTGCAGTTC
AGGCTTGCCCTTCCCTCGTGGATGTTGTAGTTGTATGTGATGAATCAAACAGTATTTATCCTTGGGAAGC
AGTAAAGAACTTTTTGGTAAAGTTTGTGACAGGCCTGGATATAGGACCTAAAAAGACACAGGTGGCGTTA
ATTCAATATGCCAATGAGCCGAGAATTATATTTAACTTGAACGATTTCGAAACCAAAGAGGATATGGTCC
AGGCCACATCTGAGACGCGCCAACATGGTGGGGACCTCACAAACACCTTCAGAGCTATCGAATTCGCAAG
AGACTACGCTTATTCACAGACTTCTGGCGGGCGCCCGGGTGCTACAAAAGTCATGGTAGTTGTGACCGAT
GGCGAGTCCCATGATGGGTCGAAGCTGAAAACTGTGATCCAGCAATGCAATGATGACGAGATACTGAGGT
TCGGCATAGCAGTTCTTGGGTATTTAAACAGAAATGCTCTTGATACTAAAAATTTAATCAAAGAAATAAA
AGCAATTGCTAGTACTCCAACCGAGAGATACTTTTTCAATGTGGCCGACGAAGCGGCTCTTCTGGAGAAG
GCTGGAACTCTAGGGGAGCAAATATTCAGCATTGAAGGCACTGTTCAAGGAGGAGACAACTTCCAGATGG
AAATGGCACAAGTTGGATTCAGTGCAGATTACGCTCCTCAAAATGATATTCTGATGTTAGGTGCAGTGGG
GGCTTTTGACTGGAGTGGAACTCTTGTCCAGGAGACATCTCACAAGCCCGTGATCTTTCCTAAACAAGCC
TTTGACCAGGTTCTGCAGGATAGAAACCACAGTTCGTTTTTAGGTTACTCTGTGGCTGCAATTTCTACTG
AAGACGGTGTCCATTTTGTTGCTGGTGCTCCTCGAGCAAATTATACTGGCCAGATAGTGTTGTACAGCGT
TAACAAGCAAGGCAATGTGACCGTGATTCAGTCTCACAGAGGGGACCAGATTGGCTCCTATTTTGGCAGT
GTGCTGTGCTCAGTTGATGTAGATAAAGACACCATTACAGACGTGCTCCTGGTAGGTGCTCCTACATACA
TGAACGACCTCAAGAAAGAAGAGGGAAAAGTCTACCTATTTACCATCACAAAGGGCATCTTGAATCAGCA
CCAGTTTCTTGAAGGGCCAGAAGGCACTGGAAATGCTCGGTTTGGTTCAGCAATTGCAGCCCTGTCAGAC
ATCAACATGGATGGCTTTAATGATGTGATTGTCGGTTCACCTGTAGAGAATGAGAACTCTGGAGCTGTGT
ACATTTACAATGGTCACCAGGGTACCATTCGCACCAAGTACTCCCAGAAAATCCTTGGGTCCAATGGAGC
CTTTAGGAGACATCTCCAGTTCTTTGGAAGGTCCCTGGATGGCTATGGTGATTTAAATGGGGATTCCATC
ACTGATGTATCCATTGGTGCTTTGGGGCAAGTGATTCAACTCTGGTCACAAAGCATTGCTGACGTGGCCA
TAGAAGCTTTGTTCACTCCAGACAAAATCACTTTGCTCAACAAGGATGCTAAGATAACCCTAAAGCTCTG
CTTCAGAGCAGAGTTTAGACCTGCTGGGCAAAACAATCAAGTAGCCATCCTGTTTAACATGACGCTTGAT
GCGGACGGACATTCATCCAGGGTAACCTCCAGGGGGGTGTTCAGAGAAAACAGTGAGCGATTCTTGCAGA
AGAATATGGTGGTAAACGAAGTGCAGAAGTGTTCTGAGCACCACATTAGCATACAGAAGCCCTCTGATGT
TGTCAACCCTTTGGATCTGCGTGTGGACATCAGTTTGGAAAACCCAGGCACTAGCCCTGCCCTCGAAGCC
TATTCTGAAACTGTCAAAGTCTTCAGTATCCCTTTCTATAAGGAGTGTGGCAGCGATGGAATTTGCATCT
CTGACCTGATCCTGGATGTCCAACAGCTGCCAGCCATTCAAACTCAATCCTTTATTGTCAGTAACCAAAA
CAAGAGGTTAACATTTTCAGTCATCCTGAAAAACAGAGGGGAAAGTGCATACAACACTGTGGTCCTGGCC
GAGTTTTCTGAGAACTTGTTTTTTGCTTCTTTCTCCATGCCGGTCGATGGAACAGAAGTAACATGTGAGG
TTGGTTCATCGCAGAAATCTGTTACCTGTGATGTGGGATACCCTGCCTTAAAGAGTGAACAGCAGGTGAC
TTTTACCATTAACTTCGACTTTAATCTTCAAAACCTCCAGAACCAGGCGGCCATCAATTTCCAAGCCTTC
AGTGAGAGCCAAGAAACAAACAAAGCAGACAATTCGGTCAGTCTCACGATTCCTCTCCTGTATGATGCCG
AACTTCACTTAACCCGATCCACCAACATCAACTTCTATGAGATCTCTTCGGATGAGAACGCTCCTTCTGT
CATCAAGAGTGTCGAAGATATTGGTCCTAAATTCATCTTCTCCCTCAAGGTAACAGCCGGAAGTGCCCCA
GTGAGCATGGCATTGGTGACTATCCACATTCCTCAGTACACCAAGGAAAAGAACCCACTCCTGTATCTGA
CTGGGATACAAACAGACCAGGCTGGCGACATCAGCTGCACAGCAGAAATAAATCCACTCAAGCTACCACA
CACCGCCCCTTCTGTATCTTTCAAGAATGAAAACTTCCGGCATACGAAAGAATTGGACTGCAGAACCACT
TCCTGCAGTAACATCACCTGCTGGCTGAAAGACCTTCACATGAAAGCAGAGTACTTCATCAATGTGACAA
CCAGAGTTTGGAACAGGACCTTTGCTGCTTCGACTTTCCAGACTGTGCAGCTGACAGCAGCGGCAGAGAT
CGATACACATAACCCTCAGCTCTTCGTGATTGAGGAAAATGCTGTCACGATTCCCCTCATGATAATGAAA
CCCACGGAGAAAGCAGAAGTACCGACAGGGGTTATCATAGGCAGCATAATTGCGGGAATCCTTTTGCTGT
TGGCTATGACTGCAGGTTTGTGGAAGCTCGGCTTCTTCAAAAGACAATATAAGAAAATGGGCCAAAATCC
AGATGAGATGGATGAGACCACAGAACTCAACAGCTAA

Translation (1178 aa):
MGPGQAGGALLLRLLMLVQGILNCLAYNVGLPGAKIFSGPSSEQFGYSVQQLTNPQGNWLLVGSPWSGFP
ENRMGDVYKCPVDLPTATCEKLNLQNSASISNVTEIKTNMSLGLTLTRNPGTGGFLTCGPLWAHQCGNQY
YATGICSDVSPDFQFLTSFSPAVQACPSLVDVVVVCDESNSIYPWEAVKNFLVKFVTGLDIGPKKTQVAL
IQYANEPRIIFNLNDFETKEDMVQATSETRQHGGDLTNTFRAIEFARDYAYSQTSGGRPGATKVMVVVTD
GESHDGSKLKTVIQQCNDDEILRFGIAVLGYLNRNALDTKNLIKEIKAIASTPTERYFFNVADEAALLEK
AGTLGEQIFSIEGTVQGGDNFQMEMAQVGFSADYAPQNDILMLGAVGAFDWSGTLVQETSHKPVIFPKQA
FDQVLQDRNHSSFLGYSVAAISTEDGVHFVAGAPRANYTGQIVLYSVNKQGNVTVIQSHRGDQIGSYFGS
VLCSVDVDKDTITDVLLVGAPTYMNDLKKEEGKVYLFTITKGILNQHQFLEGPEGTGNARFGSAIAALSD
INMDGFNDVIVGSPVENENSGAVYIYNGHQGTIRTKYSQKILGSNGAFRRHLQFFGRSLDGYGDLNGDSI
TDVSIGALGQVIQLWSQSIADVAIEALFTPDKITLLNKDAKITLKLCFRAEFRPAGQNNQVAILFNMTLD
ADGHSSRVTSRGVFRENSERFLQKNMVVNEVQKCSEHHISIQKPSDVVNPLDLRVDISLENPGTSPALEA
YSETVKVFSIPFYKECGSDGICISDLILDVQQLPAIQTQSFIVSNQNKRLTFSVILKNRGESAYNTVVLA
EFSENLFFASFSMPVDGTEVTCEVGSSQKSVTCDVGYPALKSEQQVTFTINFDFNLQNLQNQAAINFQAF
SESQETNKADNSVSLTIPLLYDAELHLTRSTNINFYEISSDENAPSVIKSVEDIGPKFIFSLKVTAGSAP
VSMALVTIHIPQYTKEKNPLLYLTGIQTDQAGDISCTAEINPLKLPHTAPSVSFKNENFRHTKELDCRTT
SCSNITCWLKDLHMKAEYFINVTTRVWNRTFAASTFQTVQLTAAAEIDTHNPQLFVIEENAVTIPLMIMK
PTEKAEVPTGVIIGSIIAGILLLLAMTAGLWKLGFFKRQYKKMGQNPDEMDETTELNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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