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Report for CCDS15496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15496.1 Public Mus musculus 1 F11r 23 108 98 CCDS HistoryNCBI Gene:16456Re-query CCDS DB by CCDS ID:15496.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043839.4 ENSMUSP00000041907.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043839.4Link to Ensembl Protein Viewer:ENSMUSP00000041907.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043839Re-query CCDS DB by Protein ID:ENSMUSP00000041907
Original member Current member NCBI NM_172647.2 NP_766235.1 Accepted alive Link to Nucleotide Sequence:NM_172647.2Link to Protein Sequence:NP_766235.1Re-query CCDS DB by Nucleotide ID:NM_172647Re-query CCDS DB by Protein ID:NP_766235Link to BLAST:NP_766235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766235.1 300 O88792 300 100% 0 0

Chromosomal Locations for CCDS 15496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171437641 171437701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171460363 171460431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171460538 171460645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171460829 171460975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171461201 171461406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171461563 171461665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171461805 171461912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171462603 171462615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171462889 171462940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171463059 171463094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGGCACCGAGGGGAAAGCCGGGAGGAAACTGTTGTTTCTCTTCACGTCTATGATCCTGGGCTCTTTGG
TACAAGGCAAGGGTTCGGTGTACACTGCTCAATCTGACGTCCAGGTTCCCGAGAACGAGTCCATCAAATT
GACCTGCACCTACTCTGGCTTCTCCTCTCCCCGAGTGGAGTGGAAGTTCGTCCAAGGCAGCACAACTGCA
CTTGTGTGTTATAACAGCCAGATCACAGCTCCCTATGCGGACCGAGTCACCTTCTCATCCAGTGGCATCA
CGTTCAGTTCTGTGACCCGGAAGGACAATGGAGAGTATACTTGCATGGTCTCCGAGGAAGGTGGCCAGAA
CTACGGGGAGGTCAGCATCCACCTCACTGTGCTTGTACCTCCATCCAAGCCGACGATCAGTGTCCCCTCC
TCTGTCACCATTGGGAACAGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACCCTCTGAATATT
CCTGGTTCAAGGACGGGATATCCATGCTTACAGCAGATGCCAAGAAAACCCGGGCCTTCATGAATTCTTC
ATTCACTATTGATCCAAAGTCGGGGGATCTGATCTTTGACCCCGTGACAGCCTTTGATAGTGGTGAATAC
TACTGCCAGGCCCAGAATGGATATGGGACAGCCATGAGGTCAGAGGCTGCACACATGGATGCTGTGGAGC
TGAATGTGGGGGGCATCGTGGCAGCTGTCCTGGTAACACTGATTCTCCTTGGACTCTTGATTTTTGGCGT
CTGGTTTGCCTATAGCCGTGGATACTTTGAAAGAACAAAGAAAGGGACTGCACCGGGTAAGAAGGTCATT
TACAGCCAGCCCAGTACTCGAAGTGAGGGGGAATTCAAACAGACCTCGTCGTTCCTGGTGTGA

Translation (300 aa):
MGTEGKAGRKLLFLFTSMILGSLVQGKGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTA
LVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS
SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY
YCQAQNGYGTAMRSEAAHMDAVELNVGGIVAAVLVTLILLGLLIFGVWFAYSRGYFERTKKGTAPGKKVI
YSQPSTRSEGEFKQTSSFLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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