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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS15831.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
15831.1 |
Public |
Mus musculus |
2 |
Col5a1 |
23 |
108 |
98 |
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Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 15831.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000028280.13 |
ENSMUSP00000028280.7 |
Accepted |
alive |
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NCBI |
NM_015734.2 |
NP_056549.2 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_056549.2 |
1838 |
O88207-1 |
1838 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 15831.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5517 nt): ATGGACGTACACACCCGCTGGAAAGCTGCGCGCCCAGGCGCCCTGCTGCTGTCTTCGCCGCTACTCCTGT TCCTGCTGCTGCTGTGGGCGCCGCCTTCGAGCCGCGCAGCTCAGCCAGCAGATCTTCTGGAGATGCTAGA TTTTCACAATTTGCCCTCAGGGGTAACGAAAACCACAGGTTTCTGTGCTACTCGAAGATCTTCCAGCGAG CCGGATGTTGCCTACCGAGTCTCTAAAGATGCACAGCTCAGCATGCCCACCAAGCAGCTGTACCCTGAGT CTGGTTTTCCCGAGGACTTCTCCATCCTGACAACCGTGAAAGCCAAGAAAGGCAGCCAGGCCTTCCTAGT CTCCATTTACAATGAGCAGGGCATCCAGCAGTTGGGGCTGGAGCTGGGCCGCTCCCCTGTCTTCCTCTAT GAGGACCACACAGGGAAGCCCGGGCCTGAAGAGTATCCGCTTTTCCCTGGCATCAACTTGTCCGATGGCA AGTGGCACCGAATTGCTCTCAGTGTCTACAAGAAAAATGTCACCTTGATCCTCGACTGTAAGAAGAAGAT TACGAAGTTCCTCAGCCGCAGTGACCACCCCATAATAGACACCAATGGGATTGTCATGTTTGGCTCCCGG ATTCTGGATGATGAAATATTTGAGGGTGACATCCAACAGTTGCTTTTCGTCTCTGACAACCGAGCTGCCT ATGACTACTGTGAGCACTACAGCCCCGACTGTGACACTGCGGTCCCTGACACACCTCAGTCACAGGACCC TAACCCGGATGAATATTACCCAGAAGGAGAGGGTGAGACCTATTACTATGAGTATCCATATTATGAAGAC CCTGAAGACCCGGGAAAGGAGCCTGCCCCTACTCAGAAGCCAGTGGAAGCTGCCAGAGAAACCACAGAGG TTCCTGAGGAGCAGACCCAGCCCCTACCCGAAGCCCCTACAGTGCCTGAGACCAGTGACACGGCTGACAA GGAGGACAGTCTAGGGATCGGGGACTATGACTACGTGCCCCCAGATGACTATTACACTCCACCCCCATAT GAAGACTTTGGATATGGCGAGGGTGTGGAGAACCCTGACCAGCCCACCAACCCCGACTCAGGGGCTGAGG TCCCCACCAGCACCACTGTTACCTCCAACACCTCCAATCCAGCTCCAGGAGAAGGGAAGGATGACCTGGG CGGCGAATTCACCGAGGAAACCATCAAGAATCTAGAGGAAAACTACTATGACCCGTACTTTGACCCCGAC TCCGACTCCAGTGTCTCTCCATCAGAGATAGGGCCAGGCATGCCCGCTAACCAGGACACCATCTTTGAGG GGATTGGAGGACCCCGAGGTGAGAAAGGGCAAAAGGGAGAACCAGCCATCATTGAGCCGGGGATGCTGAT CGAGGGGCCCCCTGGCCCTGAAGGCCCTGCTGGTCTTCCAGGACCTCCAGGAACTACAGGTCCTACTGGC CAAATGGGTGACCCTGGAGAAAGGGGTCCCCCTGGGCGCCCAGGTCTTCCTGGAGCTGATGGCTTGCCTG GCCCCCCAGGTACCATGCTCATGCTGCCGTTCCGGTTTGGAGGCGGTGGCGATGCCGGTTCTAAGGGCCC CATGGTCTCTGCGCAGGAGTCCCAGGCCCAGGCTATCCTCCAGCAAGCCAGGTTGGCACTGAGGGGACCA GCTGGCCCAATGGGTCTCACCGGGAGACCTGGCCCCATGGGTCCTCCTGGGAGTGGCGGTTTGAAAGGTG AGCCAGGAGACATGGGACCTCAGGGTCCTCGAGGTGTGCAAGGCCCACCTGGCCCAACAGGGAAGCCTGG AAGACGGGGCCGTGCTGGAAGTGATGGAGCCAGAGGCATGCCTGGACAAACAGGCCCCAAGGGTGACCGT GGCTTTGATGGTCTGGCTGGGTTGCCGGGAGAGAAAGGCCATAGAGGTGACCCTGGTCCTTCTGGCCCGC CCGGAATCCCAGGAGATGATGGAGAAAGGGGTGACGATGGAGAAGTTGGGCCCAGGGGACTGCCCGGGGA GCCTGGACCACGTGGTCTGCTTGGGCCAAAAGGCCCCCCAGGGCCTCCTGGACCTCCTGGTGTAACGGGT ATGGATGGCCAGCCTGGCCCAAAAGGAAATGTGGGTCCCCAGGGAGAGCCTGGGCCGCCAGGACAGCAGG GTAATCCTGGTGCCCAGGGTCTTCCAGGTCCCCAGGGTGCCATTGGTCCTCCAGGAGAAAAGGGTCCTTT GGGGAAACCAGGTCTCCCAGGAATGCCAGGCGCTGATGGACCCCCGGGGCACCCTGGAAAAGAAGGTCCT CCAGGAGAGAAAGGAGGCCAGGGTCCTCCTGGCCCCCAGGGTCCCATTGGCTACCCCGGTCCACGAGGAG TCAAGGGGGCAGATGGCATCCGAGGTCTGAAGGGCACCAAGGGGGAGAAGGGTGAAGACGGCTTCCCTGG GTTTAAAGGCGACATGGGAATAAAGGGTGACCGGGGGGAAATCGGCCCACCTGGTCCCCGAGGAGAAGAT GGTCCTGAAGGTCCAAAGGGTCGAGGTGGTCCCAATGGTGATCCTGGTCCCCTGGGGCCCACTGGGGAAA AGGGAAAGCTTGGCGTGCCCGGATTACCGGGGTACCCAGGAAGACAAGGGCCAAAGGGTTCCATTGGATT CCCTGGCTTCCCGGGCGCCAACGGAGAGAAGGGTGGCAGGGGGACACCTGGAAAGCCAGGACCACGGGGA CAGAGAGGCCCAACGGGCCCGCGGGGTGAACGAGGCCCACGAGGCATCACGGGGAAGCCTGGCCCTAAGG GCAACTCCGGAGGTGATGGCCCAGCTGGCCCTCCTGGTGAACGGGGACCCAACGGACCCCAAGGTCCCAC CGGCTTTCCTGGACCCAAGGGTCCCCCGGGCCCACCAGGCAAGGACGGACTCCCTGGACACCCTGGGCAG AGAGGGGAGACCGGTTTCCAAGGCAAGACTGGCCCTCCAGGGCCCCCAGGAGTGGTTGGCCCTCAGGGTC CCACAGGAGAGACGGGCCCCATGGGTGAGCGTGGCCATCCTGGTCCTCCAGGCCCTCCTGGTGAACAGGG CCTCCCAGGTGCTGCTGGGAAAGAAGGAACGAAGGGTGACCCAGGTCCTGCTGGCCTCCCTGGGAAGGAT GGCCCTCCAGGATTGCGTGGATTCCCTGGGGACCGAGGGCTACCTGGCCCCGTGGGAGCCCTTGGACTCA AAGGCAGTGAAGGCCCCCCTGGCCCACCAGGTCCTGCGGGTTCTCCAGGGGAGAGAGGACCAGCTGGTGC CGCTGGGCCCATCGGAATTCCAGGGAGACCTGGGCCTCAGGGACCTCCGGGGCCTGCTGGAGAGAAAGGA CTTCCTGGCGAGAAAGGTCCACAAGGCCCAGCTGGCCGAGATGGCCTCCAAGGTCCCGTGGGGCTCCCTG GACCAGCCGGCCCAGTGGGTCCTCCTGGAGAAGATGGAGATAAGGGAGAGATCGGAGAGCCAGGGCAGAA GGGAAGCAAGGGCGACAAAGGCGAGCAGGGTCCTCCTGGGCCTACCGGTCCTCAAGGCCCGATTGGACAG CCAGGCCCTTCGGGAGCAGATGGTGAACCTGGCCCTCGTGGACAGCAGGGCCTGTTTGGGCAGAAAGGAG ATGAAGGTTCAAGAGGTTTCCCAGGACCCCCCGGGCCAGTGGGATTGCAGGGTTTGCCAGGACCTCCAGG AGAAAAGGGCGAGACAGGAGACGTGGGCCAGATGGGCCCTCCTGGTCCACCAGGCCCCCGAGGACCCTCT GGAGCTCCAGGTGCCGATGGACCACAGGGTCCTCCTGGAGGGATTGGCAACCCTGGTGCAGTCGGAGAAA AGGGAGAACCTGGTGAAGCTGGAGATCCTGGCCTTCCAGGAGAAGGAGGTCCCCTGGGACCTAAAGGAGA AAGAGGGGAGAAGGGAGAGGCTGGCCCCTCTGGTGCTGCTGGACCCCCTGGACCCAAAGGCCCTCCTGGA GATGATGGCCCCAAAGGCAGCCCTGGCCCTGTGGGCTTTCCTGGAGATCCTGGTCCCCCTGGAGAGCCAG GCCCCGCAGGTCAAGACGGCCCACCTGGTGACAAAGGGGACGATGGTGAACCTGGGCAGACGGGGTCCCC GGGCCCTACTGGTGAACCTGGTCCATCTGGGCCTCCAGGAAAGAGGGGTCCCCCAGGCCCTGCAGGCCCT GAAGGCAGGCAGGGGGAGAAAGGAGCCAAGGGAGAAGCTGGCTTAGAAGGCCCTCCTGGGAAGACTGGCC CCATTGGCCCCCAAGGGGCCCCTGGGAAGCCTGGCCCCGATGGTCTCCGTGGAATCCCTGGTCCTGTGGG TGAGCAAGGCCTCCCAGGATCCCCAGGCCCCGATGGTCCACCCGGCCCCATGGGTCCTCCAGGACTCCCT GGCCTCAAAGGAGACTCCGGTCCCAAAGGTGAAAAGGGCCATCCAGGCCTGATTGGACTCATCGGCCCTC CGGGAGAGCAAGGTGAAAAGGGTGACCGTGGACTCCCAGGCCCCCAGGGTTCATCTGGTCCTAAAGGAGA TCAGGGCATCACAGGTCCTTCTGGCCCACTTGGGCCTCCTGGTCCTCCTGGCTTGCCGGGCCCTCCAGGT CCCAAAGGTGCTAAGGGCTCTTCGGGTCCCACCGGCCCGAAGGGTGAGGCAGGCCACCCAGGACTCCCCG GCCCACCTGGCCCTCCGGGTGAGGTCATCCAGCCCCTGCCAATCCAGGCCTCCAGGACTCGGCGGAACAT TGATGCCAGCCAGCTCCTGGACGATGGGGCTGGGGAGAGCTACGTGGATTATGCAGATGGCATGGAAGAG ATCTTTGGTTCCCTCAACTCCCTGAAGCTGGAGATTGAACAGATGAAGCGACCACTGGGCACCCAGCAGA ACCCAGCCCGTACCTGCAAGGATCTACAGCTCTGTCATCCTGACTTCCCAGATGGCGAATACTGGGTCGA TCCCAACCAAGGGTGCTCCAGGGACTCCTTCAAAGTCTACTGCAATTTCACAGCTGGAGGGTCCACGTGC GTCTTCCCTGACAAGAAGTCTGAGGGAGCCAGAATCACTTCTTGGCCCAAAGAAAACCCAGGTTCCTGGT TCAGTGAATTCAAGCGTGGGAAACTGCTCTCCTATGTGGATGCTGAAGGCAACCCCGTGGGCGTGGTACA AATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACGTCACCTACAACTGCTACCAGTCCGTG GCCTGGCAGGATGCCGCCACAGGCAGCTATGATAAGGCTATCCGCTTCTTGGGCTCCAACGATGAGGAAA TGTCTTATGATAACAACCCCTACATCCGTGCCCTGGTGGATGGCTGTGCTACCAAGAAAGGCTACCAGAA GACGGTGCTGGAGATCGACACGCCCAAAGTAGAGCAAGTCCCCATTGTGGACATCATGTTCAACGACTTT GGCGAAGCCTCACAGAAATTTGGATTTGAAGTGGGGCCAGCTTGCTTCCTAGGCTAG
Translation (1838 aa): MDVHTRWKAARPGALLLSSPLLLFLLLLWAPPSSRAAQPADLLEMLDFHNLPSGVTKTTGFCATRRSSSE PDVAYRVSKDAQLSMPTKQLYPESGFPEDFSILTTVKAKKGSQAFLVSIYNEQGIQQLGLELGRSPVFLY EDHTGKPGPEEYPLFPGINLSDGKWHRIALSVYKKNVTLILDCKKKITKFLSRSDHPIIDTNGIVMFGSR ILDDEIFEGDIQQLLFVSDNRAAYDYCEHYSPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYED PEDPGKEPAPTQKPVEAARETTEVPEEQTQPLPEAPTVPETSDTADKEDSLGIGDYDYVPPDDYYTPPPY EDFGYGEGVENPDQPTNPDSGAEVPTSTTVTSNTSNPAPGEGKDDLGGEFTEETIKNLEENYYDPYFDPD SDSSVSPSEIGPGMPANQDTIFEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTTGPTG QMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGP AGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQGPPGPTGKPGRRGRAGSDGARGMPGQTGPKGDR GFDGLAGLPGEKGHRGDPGPSGPPGIPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTG MDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP PGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGED GPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRG QRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQ RGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKD GPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKG LPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQ PGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS GAPGADGPQGPPGGIGNPGAVGEKGEPGEAGDPGLPGEGGPLGPKGERGEKGEAGPSGAAGPPGPKGPPG DDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGP EGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLP GLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPG PKGAKGSSGPTGPKGEAGHPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEE IFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTC VFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYNCYQSV AWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFNDF GEASQKFGFEVGPACFLG
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