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Report for CCDS36646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36646.1 Public Mus musculus 13 Jarid2 23 108 98 CCDS HistoryNCBI Gene:16468Re-query CCDS DB by CCDS ID:36646.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044608.13 ENSMUSP00000037774.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044608.13Link to Ensembl Protein Viewer:ENSMUSP00000037774.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044608Re-query CCDS DB by Protein ID:ENSMUSP00000037774
Original member Current member EBI ENSMUST00000173246.7 ENSMUSP00000134205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173246.7Link to Ensembl Protein Viewer:ENSMUSP00000134205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173246Re-query CCDS DB by Protein ID:ENSMUSP00000134205
Original member Current member EBI ENSMUST00000173704.7 ENSMUSP00000134675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173704.7Link to Ensembl Protein Viewer:ENSMUSP00000134675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173704Re-query CCDS DB by Protein ID:ENSMUSP00000134675
Original member NCBI NM_001205043.1 NP_001191972.1 Updated not alive Link to Nucleotide Sequence:NM_001205043.1Link to Protein Sequence:NP_001191972.1Re-query CCDS DB by Nucleotide ID:NM_001205043Re-query CCDS DB by Protein ID:NP_001191972
Current member NCBI NM_001205043.2 NP_001191972.1 Accepted alive Link to Nucleotide Sequence:NM_001205043.2Link to Protein Sequence:NP_001191972.1Re-query CCDS DB by Nucleotide ID:NM_001205043Re-query CCDS DB by Protein ID:NP_001191972Link to BLAST:NP_001191972.1
Original member Current member NCBI NM_001205044.1 NP_001191973.1 Accepted alive Link to Nucleotide Sequence:NM_001205044.1Link to Protein Sequence:NP_001191973.1Re-query CCDS DB by Nucleotide ID:NM_001205044Re-query CCDS DB by Protein ID:NP_001191973Link to BLAST:NP_001191973.1
Original member Current member NCBI NM_021878.3 NP_068678.1 Accepted alive Link to Nucleotide Sequence:NM_021878.3Link to Protein Sequence:NP_068678.1Re-query CCDS DB by Nucleotide ID:NM_021878Re-query CCDS DB by Protein ID:NP_068678Link to BLAST:NP_068678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191972.1 1234 Q62315-1 1234 100% 0 0
NP_001191973.1 1234 Q62315-1 1234 100% 0 0
NP_068678.1 1234 Q62315-1 1234 100% 0 0

Chromosomal Locations for CCDS 36646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44731872 44731916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44823380 44823515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44848280 44848421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44874283 44874452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44884704 44884880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44896254 44896489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44902226 44903258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44906233 44906735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44907494 44907586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44910343 44910461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44910537 44910607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44911166 44911280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44913181 44913286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44913651 44913833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44914246 44914376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44914764 44914947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44916417 44916524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44919800 44919952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3705 nt):
ATGAGCAAGGAAAGACCCAAGAGGAATATCATTCAGAAGAAATACGATGACAGCGATGGGATCCCGTGGT
CAGAAGAGAGAGTTGTACGAAAAGTCCTGTATTTGTCCCTAAAGGAATTCAAGAATGCACAGAAAAGGCA
GCATGGGGAAGGCCTTGCCGGGAGCCTGAAGGCGGTAAATGGGCTTCTTGGTAATGCCCAGGCTAAGGCA
CTAGGACCAGCCTCAGAGCAGTCAGAGAACGAGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACG
ATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAGGCCCAGGCTGCAAGCACAAAGGAAGTT
TGCTCAATCTCAGCCGAATAGTCCCAGCACAACTCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCA
GCTACTCAAATTTCTGACCTCTCTAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTC
GAGGTTCTCCTGCGCTGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAAGA
GGAAGATGATGAGACGGAAGATGTCAAAGCAACCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCC
AGGAAAGGAAAAACCCATAAGCATGTACACAACGGGCACGTTTTCAATGGCTCCAGTAGGTCAGCACGGG
AGAAAGAGCCTGCTCACAAACACAGAAGCAAAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAG
GGCAGACAGCCGGAGAGAACAGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCC
AAGGGACTTGCTGCCAACCACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAGGTGT
CTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAAGATCCGAGA
AGTCAGACCTTCACCATCCAAAACTGTGAAGTACACTGCCACAGTGACCAAGGGGACTGTCACATACACC
AAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCCAACCACCACAAACCCAGTTCAGCTGTCAACCACA
CAATCTCAGGGAAAACTGAAAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTC
CAAGTCCACCGGGCCTGCTGCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAG
GAGGTGGGGGGGCGGCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAAG
TGGACAAGCCGCAGTCACCCCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAAGCCCCTGGCAAAAA
GGCCTCAGCGGCTTCAGGAGAAAAGTCTCTGCTGAATGGACACGTGAAGAAGGAAGTGCCCGAGCGAAGT
TTGGAAAGGAATCGGCCAAAGCGGGCCGCGGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGA
CAGAGGGCACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACA
GGGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCC
TCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTACGGGA
TGTGTCGCGTGATTCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAGATGCGCTTTGTCAC
GCAGATCCAGCACATCCATAAGCTGGGCCGGCGCTGGGGCCCCAACGTGCAGCGGCTAGCCTGCATAAAG
AAGCACCTCAGATCTCAGGGCATCACCATGGATGAGCTCCCCCTCATAGGAGGCTGTGAGCTCGACCTGG
CCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAA
ACTAGCAGACATGCTGCGCATTCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGC
CAGTACCTGCTTTCCTATGACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGG
AGAAGGAGATCCTGGAAAAGCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCCA
CTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTCGTCCACGGTGTCACACCTAGGAATGGATTCCGTAGC
AAGCTCAAGGAGGTGGGCCGGGCCCCACTGAAGACGGGCCGGCGGCGGCTGTTCGCTCAGGAAAAAGAAG
TGGTCAAAGAGGAGGAAGAAGACAAAGGTGTCCTCAATGACTTCCACAAGTGCATCTATAAGGGAAGATC
TGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGTTTCAGCAAGGAGCCCGCA
CCAGCAGAGATTGAGCAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCG
GAAAGGTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAGGCATGG
ATGGAACCTCACTGTCCTCCCAAATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTG
ACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTC
CATATATTGACTACTTACACACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAA
GCTGGAGGACGTAGTCCACACTCTGCTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAAT
GTAATGATCTCCCCAGAGGTGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGTGGGC
AGTTTGTCGTCTGCTTCCCGGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAACGTCTCAGAGACAGT
GCACTTTGCTACCACCCAGTGGACAAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCGCCATATA
GCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCAAAAAAGGAAAATGGTC
CCACCCTCAGTACCATCTCAGCCCTTCTGGATGAGCTCAGGGATACAGAGCTGCGGCAGCGCAGGCTGTT
GTTCGAGGCTGGCCTTCACTCTTCTGCACGCTATGGCAGCCACGACGGCAACAGCACAGTGGCGGATGGG
AAGAAAAAGCCTCGAAAGTGGCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGATCTGCCAGCACTTGT
GCTACCTGTCCATGGTGGTACAGGAGAATGAGAATGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGT
GGAGAAGCAGAAGTCTTGCCGTGGGCTGAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTG
GTCAACCAGATATGTGGCAAAGTGTCTGGCAAACACGGTGGCATCGAGAACTGTCTCAACAAACCCACAC
CAAAAAGAGGTCCCCGCAAGAGAGCGACCGTGGATGTGCCGCCATCTCGGCTCCCATCCTCATGA

Translation (1234 aa):
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKA
LGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPP
ATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTP
RKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSA
KGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYT
KAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTK
EVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERS
LERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRP
SAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIK
KHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC
QYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRS
KLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPA
PAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGV
TIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESN
VMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHI
AKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADG
KKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISL
VNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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