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Report for CCDS20556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20556.1 Public Mus musculus 6 Kcna6 23 108 98 CCDS HistoryNCBI Gene:16494Re-query CCDS DB by CCDS ID:20556.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 20556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040751.5 ENSMUSP00000036872.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040751.5Link to Ensembl Protein Viewer:ENSMUSP00000036872.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040751Re-query CCDS DB by Protein ID:ENSMUSP00000036872
Original member Current member EBI ENSMUST00000112242.1 ENSMUSP00000107861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112242.1Link to Ensembl Protein Viewer:ENSMUSP00000107861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112242Re-query CCDS DB by Protein ID:ENSMUSP00000107861
Original member Current member EBI ENSMUST00000185333.1 ENSMUSP00000139481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185333.1Link to Ensembl Protein Viewer:ENSMUSP00000139481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185333Re-query CCDS DB by Protein ID:ENSMUSP00000139481
Original member NCBI NM_013568.6 NP_038596.1 Updated not alive Link to Nucleotide Sequence:NM_013568.6Link to Protein Sequence:NP_038596.1Re-query CCDS DB by Nucleotide ID:NM_013568Re-query CCDS DB by Protein ID:NP_038596
Current member NCBI NM_013568.7 NP_038596.1 Accepted alive Link to Nucleotide Sequence:NM_013568.7Link to Protein Sequence:NP_038596.1Re-query CCDS DB by Nucleotide ID:NM_013568Re-query CCDS DB by Protein ID:NP_038596Link to BLAST:NP_038596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038596.1 529 Q61923 529 100% 0 0

Chromosomal Locations for CCDS 20556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126738335 126739924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAGATCGGAGAAATCCCTGACGCTGGCGGCGCCGGGGGAGGTCCGTGGGCCGGAGGGGGAGCAACAGG
ATGCGGGTGAGTTCCAGGAGGCCGAGGGCGGCGGCGGCTGCTGTAGTAGTGAGAGGTTGGTGATCAACAT
CTCCGGGCTGCGCTTCGAGACGCAGCTGCGCACCCTGTCGCTGTTCCCTGACACGCTGCTAGGAGACCCT
GGCCGCAGAGTCCGTTTCTTTGACCCCTTGAGGAACGAGTACTTCTTTGACCGCAACCGACCCAGCTTCG
ACGCTATCCTTTATTACTATCAATCTGGAGGTCGCCTGCGCAGGCCTGTTAATGTGCCCCTGGACATTTT
TATGGAAGAGATCCGCTTCTATCAGTTGGGAGAGGAAGCCCTGGCGGCCTTCCGGGAGGATGAGGGTTGC
CTGCCCGAAGGTGGCGAGGATGAGAAACCACTCCCCTCCCAGCCTTTCCAGCGACAGGTCTGGCTTCTCT
TTGAGTACCCGGAGAGTTCCGGGCCCGCCCGAGGCATCGCCATCGTCTCAGTATTGGTCATCCTCATCTC
CATCGTCATCTTTTGCCTGGAGACCTTGCCTCAATTCCGTGCAGATGGGCGCGGTGGAAGCAACGAGGGT
AGTGGGACCCGCTTGTCTCCGGCCTCCAGGAGCCACGAGGAAGAAGATGAGGATGAAGATTCCTATGCAT
TTCCTGGTAGCATTCCCTCTGGGGGGTTGGGGACTGGAGGAACATCTTCACTTAGTACTCTCGGGGGTTC
TTTCTTCACAGACCCCTTCTTCTTGGTGGAAACTCTGTGTATCGTCTGGTTCACGTTTGAGCTCCTGGTG
CGCTTCTCTGCCTGTCCCAGCAAGGCGGCCTTCTTTCGCAATATCATGAACATCATTGACTTGGTGGCCA
TTTTCCCCTACTTTATCACCTTGGGCACCGAGCTAGTGCAACGTCACGAGCAGCAGTCTGTGAGTGGTGG
CAGTGGTCAGAATGGGCAGCAGGCCATGTCCCTAGCCATCCTCAGGGTGATCCGCCTGGTCCGGGTGTTC
CGAATCTTCAAGCTCTCCCGCCATTCCAAGGGGCTGCAGATCCTGGGTAAGACCTTACAGGCGTCCATGC
GGGAGCTCGGGCTGCTCATCTTCTTCCTCTTCATCGGAGTCATCCTCTTTTCCAGCGCTGTCTACTTCGC
AGAGGCTGATGATGTTGACTCGCTCTTCCCTAGCATCCCAGATGCCTTCTGGTGGGCTGTGGTTACAATG
ACCACGGTAGGTTATGGGGACATGTACCCCATGACGGTAGGGGGCAAGATTGTGGGCTCACTGTGCGCCA
TTGCTGGGGTCCTCACCATTGCATTACCGGTACCGGTCATTGTCTCCAATTTCAACTACTTCTACCACCG
AGAGACGGAGCAGGAGGAGCAAGGCCAGTATACCCACGTCACTTGTGGGCAGCCCACTCCGGACTTGAAG
GCAACGGACAATGGGCTTGGCAAACCTGACTTTGCCGAGGCTTCACGGGAACGCCGGCCCAGCTACCTTC
CGACTCCACATCGAGCTTATGCGGAGAAAAGGATGCTCACCGAGGTTTGA

Translation (529 aa):
MRSEKSLTLAAPGEVRGPEGEQQDAGEFQEAEGGGGCCSSERLVINISGLRFETQLRTLSLFPDTLLGDP
GRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFMEEIRFYQLGEEALAAFREDEGC
LPEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPQFRADGRGGSNEG
SGTRLSPASRSHEEEDEDEDSYAFPGSIPSGGLGTGGTSSLSTLGGSFFTDPFFLVETLCIVWFTFELLV
RFSACPSKAAFFRNIMNIIDLVAIFPYFITLGTELVQRHEQQSVSGGSGQNGQQAMSLAILRVIRLVRVF
RIFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADDVDSLFPSIPDAFWWAVVTM
TTVGYGDMYPMTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEQEEQGQYTHVTCGQPTPDLK
ATDNGLGKPDFAEASRERRPSYLPTPHRAYAEKRMLTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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