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Report for CCDS1769.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1769.2 Public Homo sapiens 2 TOGARAM2 24 110 108 CCDS HistoryNCBI Gene:165186Re-query CCDS DB by CCDS ID:1769.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1769.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379558.5 ENSP00000368876.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379558.5Link to Ensembl Protein Viewer:ENSP00000368876.3Re-query CCDS DB by Nucleotide ID:ENST00000379558Re-query CCDS DB by Protein ID:ENSP00000368876
Original member Current member NCBI NM_199280.4 NP_954974.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199280.4Link to Protein Sequence:NP_954974.2Re-query CCDS DB by Nucleotide ID:NM_199280Re-query CCDS DB by Protein ID:NP_954974Link to BLAST:NP_954974.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954974.2 1019 Q6ZUX3-1 1019 100% 0 0

Chromosomal Locations for CCDS 1769.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28994835 28994862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28998143 28998253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28999181 28999468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29002536 29002747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29003492 29003682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29011455 29011501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29014395 29014561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29017154 29017304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29017792 29017956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29022158 29022308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29023086 29023191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29024139 29024374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29026853 29027011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29032934 29033051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29033469 29033563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29035464 29035656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29036541 29036757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29045324 29045410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29051756 29052093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3060 nt):
ATGGGCACCCGTGACGATGTCCCCGAAGCCAAGGTCCTGGTCCCCGTGGCCGTGTACTGCGGGAGCATCC
CTCGGACCAGTGCTGGGCCCCGGGTGCTCCCGCCTGGAAGCATCAACTCCAGTCTGCCTCATGGAGAAGG
TTCTCTCCAGCCTGAGCCAAGAGCCCTGCTGAACAACGAGGAACCGTCACAGCTCCTGCGTGGACTCGGA
CAGCTGGGTGGCCTCAAGCTGGACACCCCTTCCAAGGGCTGGCAGGCAAGGAATGGTCACCCCAGGAACC
TCAGGGCCTTGTCTTTGGGGGACCAGCCCCTGGTGCTCCTCCCTTCTCCGGAGTCAGAGGCCAACAGCGT
GGCCAGGGACACCATCCAGATTAAGGACAAGCTCAAGAAAAGGAGGCTCTCAGAGGGCTTGGCAGCGTCT
TCCCGAGCCTCTCTGGATCCAGGGGGAGGCCCCCAAGGAGTTCCCCTGCACAGCACCATCCCCCGAGCCA
CCTCTCAGAGGCTGCTGAGGGTGCCCAGGCCGATGCCTCTCATCCAGAGCATCCCTACCACCCCTGAGGC
CAGCGGAGTCAAAGAGAAGGGCCTGGACCTACCGGGGAGCATTCCGGGTCCTCACGAGTTGAGACCCGGT
GCTCAGGAGGCGCAGATCTCCTGGCAATACCTGCACTGCAATGATGAGAAGATGCAGAAGTCCCTGGGCG
CCATCGTGATCCCACCCATCCCAAAGGCCAGGACGGTTGCAGCGACCCCCTCCCGTGTGCCTGGCTCCCT
TCCCAGCCCGTTACCTCCAGGCCAGGGAGTCCTCACAGGCCTGAGGGCCCCACGCACGCGATTGGCTCGG
GGGAGTGGGCCTCGGGAGAAGACCCCTGCATCTCTGGAGCCAAAACCTTTGGCCTCACCCATCAGAGACA
GGCCTGCCGCTGCCAAGAAGCCTGCCCTGCCTTTTTCTCAGTCTGCTCCCACGCTGACAGCCTTCTCCTT
TGACTGTGCCAGAGAAGCCTGCCCTCCGCTGAAAGAAGAGGACCAGAAGGAGATCGGCACCAAGATCCAA
GTCACCATCTCCAAGTCTGCCCGGGAGAAGATGCAGCTGAAGCAGATGAAGGAGATGGAGCTGCTTCGGA
GGCTGGAGGAGCCCAGGACAGGGCAGGAGCTCACTTCCCAGTGCCTGGGCTCCCAGAGAGCCTTCATGAA
GGAAGGCCTCCTTCCCCTCCGGGGCAGCGGGACACTGTCTGTGCCCACTAGGCTGAGCGGCCCATGCAGA
AACGACGTCAGCATCATCCTGAGGAAGTGGGCCAGCCGGGCCTCCCTGCCCAGCATCCCCATCAGCCGGC
AGGAGCCCCGCTTTGCCCGCCACGCCTCAGCTAACTCATTACCTGCGGTGCTCACGTTGGGGTCTCCTGA
ATGGGAAGAAGAGGAGGAGATGGATCTTAGAGCCTGTAAGGAGTTGAGGCCTTTCTCGAACCCGGAGCTG
GGGCTGAGGGATGCACTCCAGTGCCTCAACAGCAGTGACTGGCAGATGAAGGAGAAGGGTCTGGTGAGCA
TCCAGCGCTTGGCAGCCTGTCACTCAGAGGTCCTCACCGGGAAGCTGCACGACGTGTGCTTGGTGGTGAC
TGGGGAGGTCACCAACCTGCGGTCCAAGGTGTCTCACCTGGCCATCAGCACCTTGGGAGACCTCTTCCAG
GCCTTGAAGAAGAATATGGACCAGGAGGCCGAGGAGATCGCCCGCTGCTTGCTGCAGAAGATGGCGGACA
CCAACGAGTTCATCCAGAGAGCAGCCGGCCAGTCTCTGAGGGCTATGGTGGAGAATGTGACCCTTGCCCG
CTCCCTGGTGGTCCTCACCTCGGCGGGTGTCTACCACCGGAACCCCTTGATCCGGAAATACGCGGCTGAG
CACCTCTCAGCTGTGCTGGAGCAGATCGGCGCTGAGAAGCTTCTCTCGGGCACCAGAGACAGCACAGACA
TGTTGGTGCACAACCTGGTGAGGCTGGCACAGGACTCCAACCAGGACACCAGATTTTATGGCCGGAAGAT
GGTGAATATCTTGATGGCGAACACTAAGTTTGATGCATTTCTGAAGCAATCTCTCCCATCTTACGACTTG
CAGAAGGTCATGGCGGCCATTAAACAGCAGGGAATAGAAGATAATGATGAACTTCCCTCTGCCAAAGGCC
GCAAGGTGTTGAGGAGTCTGGTGGTGTGTGAGAACGGGCTGCCCATCAAGGAGGGGCTCAGCTGCAATGG
CCCAAGGCTGGTGGGGCTGCGCTCCACACTGCAGGGCCGCGGGGAGATGGTGGAGCAGCTACGGGAGCTG
ACACGGCTGCTGGAGGCCAAGGACTTCCGGTCCCGGATGGAAGGCGTGGGGCAGCTCCTGGAGCTCTGCA
AGGCCAAGACGGAGCTTGTCACTGCCCACCTGGTCCAGGTCTTTGATGCTTTCACCCCAAGGCTTCAGGA
TTCCAACAAGAAAGTGAACCAGTGGGCGCTGGAGTCCTTCGCCAAGATGATCCCCCTCCTCAGAGAGAGC
TTACACCCCATGCTGCTCTCCATCATCATCACTGTTGCAGACAACCTCAACTCCAAGAACTCAGGGATTT
ACGCTGCTGCCGTGGCTGTGCTGGATGCGATGGTTGAGAGCCTGGACAACCTTTGCCTTCTACCAGCGCT
TGCTGGGCGAGTGCGTTTCCTGAGTGGCCGTGCGGTGCTGGATGTCACAGATCGCCTGGCAGTGCTGGTG
GCCTCAGTTTACCCCCGGAAGCCTCAAGCTGTAGAGCGGCATGTCCTTCCCATCCTCTGGCACTTCCTGA
ACACCGCCACCAGGAATGGCACCCTGCCTGGACCCAGCGGGAACATCCGCGGGGTGGTGTGCCGGCTGTC
CAGGAGCCTCCAGGAGCACATGGGCTCCCGCCTGCTGGACTTTGCCGCCAGCCAGCCAAAGCACGTCCTC
AAGACGCTCCAGGAACTCTTAGACTCAGAGTCCTTGGGAGGCAGCCGCAAGGCCACTGACAGAGGGGTGG
CCCCTGACAGCAAGACAACTGGCAGCTCATACCCTTTTCAGCTGGATTAA

Translation (1019 aa):
MGTRDDVPEAKVLVPVAVYCGSIPRTSAGPRVLPPGSINSSLPHGEGSLQPEPRALLNNEEPSQLLRGLG
QLGGLKLDTPSKGWQARNGHPRNLRALSLGDQPLVLLPSPESEANSVARDTIQIKDKLKKRRLSEGLAAS
SRASLDPGGGPQGVPLHSTIPRATSQRLLRVPRPMPLIQSIPTTPEASGVKEKGLDLPGSIPGPHELRPG
AQEAQISWQYLHCNDEKMQKSLGAIVIPPIPKARTVAATPSRVPGSLPSPLPPGQGVLTGLRAPRTRLAR
GSGPREKTPASLEPKPLASPIRDRPAAAKKPALPFSQSAPTLTAFSFDCAREACPPLKEEDQKEIGTKIQ
VTISKSAREKMQLKQMKEMELLRRLEEPRTGQELTSQCLGSQRAFMKEGLLPLRGSGTLSVPTRLSGPCR
NDVSIILRKWASRASLPSIPISRQEPRFARHASANSLPAVLTLGSPEWEEEEEMDLRACKELRPFSNPEL
GLRDALQCLNSSDWQMKEKGLVSIQRLAACHSEVLTGKLHDVCLVVTGEVTNLRSKVSHLAISTLGDLFQ
ALKKNMDQEAEEIARCLLQKMADTNEFIQRAAGQSLRAMVENVTLARSLVVLTSAGVYHRNPLIRKYAAE
HLSAVLEQIGAEKLLSGTRDSTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANTKFDAFLKQSLPSYDL
QKVMAAIKQQGIEDNDELPSAKGRKVLRSLVVCENGLPIKEGLSCNGPRLVGLRSTLQGRGEMVEQLREL
TRLLEAKDFRSRMEGVGQLLELCKAKTELVTAHLVQVFDAFTPRLQDSNKKVNQWALESFAKMIPLLRES
LHPMLLSIIITVADNLNSKNSGIYAAAVAVLDAMVESLDNLCLLPALAGRVRFLSGRAVLDVTDRLAVLV
ASVYPRKPQAVERHVLPILWHFLNTATRNGTLPGPSGNIRGVVCRLSRSLQEHMGSRLLDFAASQPKHVL
KTLQELLDSESLGGSRKATDRGVAPDSKTTGSSYPFQLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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