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Report for CCDS3574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3574.1 Public Homo sapiens 4 CXCL11 24 110 108 CCDS HistoryNCBI Gene:6373Re-query CCDS DB by CCDS ID:3574.1Re-query CCDS DB by GeneID:6373See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306621.8 ENSP00000306884.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306621.8Link to Ensembl Protein Viewer:ENSP00000306884.3Re-query CCDS DB by Nucleotide ID:ENST00000306621Re-query CCDS DB by Protein ID:ENSP00000306884
Original member Current member EBI ENST00000503860.1 ENSP00000425819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503860.1Link to Ensembl Protein Viewer:ENSP00000425819.1Re-query CCDS DB by Nucleotide ID:ENST00000503860Re-query CCDS DB by Protein ID:ENSP00000425819
Original member Current member NCBI NM_005409.5 NP_005400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005409.5Link to Protein Sequence:NP_005400.1Re-query CCDS DB by Nucleotide ID:NM_005409Re-query CCDS DB by Protein ID:NP_005400Link to BLAST:NP_005400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005400.1 94 O14625 94 100% 0 0

Chromosomal Locations for CCDS 3574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76034793 76034816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76035047 76035119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76035216 76035342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76035927 76035987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGAGTGTGAAGGGCATGGCTATAGCCTTGGCTGTGATATTGTGTGCTACAGTTGTTCAAGGCTTCCCCA
TGTTCAAAAGAGGACGCTGTCTTTGCATAGGCCCTGGGGTAAAAGCAGTGAAAGTGGCAGATATTGAGAA
AGCCTCCATAATGTACCCAAGTAACAACTGTGACAAAATAGAAGTGATTATTACCCTGAAAGAAAATAAA
GGACAACGATGCCTAAATCCCAAATCGAAGCAAGCAAGGCTTATAATCAAAAAAGTTGAAAGAAAGAATT
TTTAA

Translation (94 aa):
MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENK
GQRCLNPKSKQARLIIKKVERKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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