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Report for CCDS3955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3955.1 Public Homo sapiens 5 ITGA1 24 110 108 CCDS HistoryNCBI Gene:3672Re-query CCDS DB by CCDS ID:3955.1Re-query CCDS DB by GeneID:3672See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282588.7 ENSP00000282588.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282588.7Link to Ensembl Protein Viewer:ENSP00000282588.5Re-query CCDS DB by Nucleotide ID:ENST00000282588Re-query CCDS DB by Protein ID:ENSP00000282588
Original member Current member NCBI NM_181501.2 NP_852478.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181501.2Link to Protein Sequence:NP_852478.1Re-query CCDS DB by Nucleotide ID:NM_181501Re-query CCDS DB by Protein ID:NP_852478Link to BLAST:NP_852478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852478.1 1179 P56199 1179 100% 0 0

Chromosomal Locations for CCDS 3955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52788354 52788414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52849365 52849485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52861447 52861559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52864763 52864851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52864971 52865082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52865690 52865817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52881873 52882021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52887815 52887965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52893675 52893840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52897455 52897528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52898239 52898383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52905763 52905908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52908898 52909041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52910162 52910419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52915464 52915594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52918732 52918898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52920332 52920468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52922777 52922887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52925278 52925487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52927584 52927664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52929625 52929701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52932047 52932136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52933894 52933996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52937401 52937514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52939590 52939691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52939840 52939944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52944943 52945035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52947345 52947461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52952407 52952451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3540 nt):
ATGGCCCCTCGGCCCCGCGCCCGCCCAGGGGTCGCTGTCGCCTGCTGCTGGCTCCTCACTGTTGTTCTAC
GCTGCTGCGTATCATTCAATGTTGATGTGAAAAATTCAATGACTTTCAGCGGCCCGGTGGAAGACATGTT
TGGATATACTGTTCAACAATATGAAAATGAAGAAGGAAAATGGGTGCTTATTGGTTCTCCGTTAGTTGGC
CAACCCAAAAACAGAACTGGAGATGTCTATAAGTGTCCAGTTGGGAGAGGTGAATCATTACCTTGTGTAA
AGTTGGATCTACCAGTTAATACATCAATTCCCAATGTCACAGAAGTAAAGGAGAACATGACATTTGGATC
AACTTTAGTCACCAACCCAAATGGAGGATTTCTGGCTTGTGGGCCCTTATATGCCTATAGATGTGGACAT
TTGCATTACACAACTGGAATCTGTTCTGACGTCAGCCCCACATTTCAAGTCGTGAATTCCATTGCCCCTG
TACAAGAATGCAGCACTCAACTGGACATAGTCATAGTGCTGGATGGTTCCAACAGTATTTACCCATGGGA
CAGTGTTACAGCTTTTTTAAATGACCTTCTTGAAAGAATGGATATTGGTCCTAAACAGACACAGGTTGGA
ATTGTACAGTATGGAGAAAACGTGACCCATGAGTTCAACCTCAATAAGTATTCTTCCACCGAAGAGGTAC
TTGTTGCAGCAAAGAAAATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGGAATAGACACAGC
AAGAAAGGAGGCATTCACGGAAGCCCGGGGTGCCCGAAGAGGAGTTAAAAAAGTCATGGTTATTGTGACA
GATGGAGAGTCTCATGACAATCATCGACTGAAGAAGGTCATCCAAGACTGTGAAGATGAAAACATTCAAC
GGTTTTCCATAGCTATTCTTGGCAGCTATAACCGAGGAAATTTAAGCACTGAAAAATTTGTGGAGGAAAT
AAAATCAATTGCAAGTGAACCCACTGAAAAGCATTTCTTCAATGTCTCTGATGAATTGGCTCTAGTCACC
ATTGTTAAAACTCTGGGAGAAAGAATATTTGCCCTGGAAGCCACAGCTGACCAGTCAGCAGCTTCATTTG
AAATGGAAATGTCTCAGACTGGCTTCAGTGCTCATTATTCACAGGACTGGGTCATGCTTGGAGCAGTAGG
AGCCTATGATTGGAATGGAACAGTTGTCATGCAGAAGGCTAGTCAAATCATAATCCCTCGAAACACAACC
TTTAATGTTGAGTCTACCAAAAAGAATGAACCGCTTGCTTCTTATTTAGGTTACACTGTAAACTCTGCTA
CTGCTTCTTCTGGAGATGTGCTCTATATTGCTGGACAGCCTCGGTACAATCATACAGGCCAGGTCATTAT
CTACAGGATGGAAGATGGAAACATCAAAATTCTCCAGACGCTCAGTGGAGAACAGATTGGTTCCTACTTT
GGCAGTATTTTAACAACAACTGACATTGACAAGGATTCTAATACTGACATTCTTCTAGTCGGAGCCCCTA
TGTACATGGGAACAGAGAAGGAGGAGCAAGGAAAAGTGTATGTGTATGCTCTCAATCAGACAAGGTTTGA
ATATCAAATGAGCCTGGAACCTATTAAGCAGACGTGCTGTTCATCTCGGCAGCACAATTCATGCACAACA
GAAAACAAAAATGAGCCATGCGGGGCTCGTTTTGGAACTGCAATTGCTGCTGTAAAAGACCTCAATCTTG
ATGGATTTAATGACATCGTGATAGGAGCTCCGCTGGAAGATGATCACGGGGGAGCTGTGTACATTTATCA
TGGAAGTGGCAAGACTATAAGGAAAGAGTATGCACAACGTATTCCATCAGGTGGGGATGGTAAGACACTG
AAATTTTTTGGCCAGTCTATCCACGGAGAAATGGATTTAAATGGTGACGGTCTGACAGATGTGACTATTG
GGGGCCTTGGTGGTGCTGCCCTCTTCTGGTCCCGAGATGTGGCCGTAGTTAAAGTGACCATGAATTTTGA
GCCAAATAAAGTGAATATTCAAAAGAAAAACTGCCATATGGAGGGAAAGGAAACAGTATGCATAAATGCT
ACAGTGTGTTTTGATGTGAAATTAAAGTCTAAAGAAGACACGATTTATGAAGCTGATTTGCAGTACCGTG
TCACCCTAGATTCACTAAGACAAATATCACGAAGTTTTTTCTCTGGAACTCAAGAGAGAAAGGTTCAAAG
GAACATCACAGTTCGAAAATCAGAATGCACTAAGCACTCCTTCTACATGTTGGACAAGCATGACTTTCAG
GACTCTGTGAGAATAACGTTGGACTTTAATCTTACCGATCCAGAAAATGGGCCTGTTCTTGATGATTCTC
TACCAAACTCAGTACATGAATATATTCCCTTTGCCAAAGATTGTGGAAATAAGGAAAAATGTATCTCAGA
CCTCAGCCTGCATGTCGCCACCACTGAAAAGGACCTGCTGATTGTCCGATCCCAGAATGATAAGTTCAAC
GTTAGCCTCACAGTCAAAAATACAAAGGACAGTGCCTATAACACCAGGACAATAGTGCATTATTCTCCAA
ATCTAGTTTTTTCAGGAATTGAGGCTATCCAAAAAGACAGTTGTGAATCTAATCATAATATCACATGTAA
AGTTGGATATCCCTTCCTGAGAAGAGGAGAGATGGTAACTTTCAAAATATTGTTTCAGTTTAACACATCC
TATCTCATGGAAAATGTGACCATTTATTTAAGTGCAACAAGTGACAGCGAAGAACCTCCTGAAACCCTTT
CTGATAATGTAGTAAACATTTCTATCCCGGTAAAATATGAAGTTGGACTACAGTTTTACAGCTCTGCAAG
TGAATACCACATTTCAATTGCTGCCAATGAGACAGTCCCTGAAGTTATTAATTCTACTGAGGACATTGGA
AATGAAATTAATATCTTCTACTTGATTAGAAAAAGTGGATCTTTTCCAATGCCAGAGCTTAAGCTGTCAA
TTTCATTCCCCAATATGACATCAAATGGTTACCCTGTGCTGTACCCAACTGGATTGTCATCTTCTGAGAA
TGCAAACTGCAGACCCCATATCTTTGAGGATCCTTTCAGTATCAACTCTGGAAAGAAAATGACTACATCA
ACTGACCATCTCAAACGAGGCACAATTCTGGACTGCAATACATGTAAATTTGCTACCATCACATGTAATC
TCACTTCTTCTGACATCAGCCAAGTCAATGTTTCGCTTATCTTGTGGAAACCAACTTTTATAAAATCATA
TTTTTCCAGCTTAAATCTTACTATAAGGGGAGAACTTCGGAGTGAAAATGCATCTCTGGTTTTAAGTAGC
AGCAATCAAAAAAGAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCGGGCAGAGTGCCATTATGGG
TCATCCTGCTGAGTGCTTTTGCCGGATTGTTGCTGTTAATGCTGCTCATTTTAGCACTGTGGAAGATTGG
ATTCTTCAAAAGACCACTGAAAAAGAAAATGGAGAAATGA

Translation (1179 aa):
MAPRPRARPGVAVACCWLLTVVLRCCVSFNVDVKNSMTFSGPVEDMFGYTVQQYENEEGKWVLIGSPLVG
QPKNRTGDVYKCPVGRGESLPCVKLDLPVNTSIPNVTEVKENMTFGSTLVTNPNGGFLACGPLYAYRCGH
LHYTTGICSDVSPTFQVVNSIAPVQECSTQLDIVIVLDGSNSIYPWDSVTAFLNDLLERMDIGPKQTQVG
IVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVT
DGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVT
IVKTLGERIFALEATADQSAASFEMEMSQTGFSAHYSQDWVMLGAVGAYDWNGTVVMQKASQIIIPRNTT
FNVESTKKNEPLASYLGYTVNSATASSGDVLYIAGQPRYNHTGQVIIYRMEDGNIKILQTLSGEQIGSYF
GSILTTTDIDKDSNTDILLVGAPMYMGTEKEEQGKVYVYALNQTRFEYQMSLEPIKQTCCSSRQHNSCTT
ENKNEPCGARFGTAIAAVKDLNLDGFNDIVIGAPLEDDHGGAVYIYHGSGKTIRKEYAQRIPSGGDGKTL
KFFGQSIHGEMDLNGDGLTDVTIGGLGGAALFWSRDVAVVKVTMNFEPNKVNIQKKNCHMEGKETVCINA
TVCFDVKLKSKEDTIYEADLQYRVTLDSLRQISRSFFSGTQERKVQRNITVRKSECTKHSFYMLDKHDFQ
DSVRITLDFNLTDPENGPVLDDSLPNSVHEYIPFAKDCGNKEKCISDLSLHVATTEKDLLIVRSQNDKFN
VSLTVKNTKDSAYNTRTIVHYSPNLVFSGIEAIQKDSCESNHNITCKVGYPFLRRGEMVTFKILFQFNTS
YLMENVTIYLSATSDSEEPPETLSDNVVNISIPVKYEVGLQFYSSASEYHISIAANETVPEVINSTEDIG
NEINIFYLIRKSGSFPMPELKLSISFPNMTSNGYPVLYPTGLSSSENANCRPHIFEDPFSINSGKKMTTS
TDHLKRGTILDCNTCKFATITCNLTSSDISQVNVSLILWKPTFIKSYFSSLNLTIRGELRSENASLVLSS
SNQKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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