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Report for CCDS12934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12934.1 Public Homo sapiens 19 NLRP9 24 110 108 CCDS HistoryNCBI Gene:338321Re-query CCDS DB by CCDS ID:12934.1Re-query CCDS DB by GeneID:338321See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332836.7 ENSP00000331857.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332836.7Link to Ensembl Protein Viewer:ENSP00000331857.2Re-query CCDS DB by Nucleotide ID:ENST00000332836Re-query CCDS DB by Protein ID:ENSP00000331857
Original member Current member NCBI NM_176820.4 NP_789790.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176820.4Link to Protein Sequence:NP_789790.2Re-query CCDS DB by Nucleotide ID:NM_176820Re-query CCDS DB by Protein ID:NP_789790Link to BLAST:NP_789790.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789790.2 991 Q7RTR0-1 991 100% 0 0

Chromosomal Locations for CCDS 12934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55708912 55709044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55711800 55711970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55712420 55712590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55715055 55715225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55716728 55716898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55723980 55724144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55729831 55729992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55731999 55733550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55738095 55738374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCAGAATCTTTTTTTTCGGATTTTGGCTTGTTGTGGTATCTGAAGGAGCTCAGAAAGGAAGAGTTTT
GGAAATTTAAGGAGCTCCTCAAACAACCTTTGGAGAAATTTGAACTCAAGCCAATCCCCTGGGCTGAGCT
GAAGAAGGCCTCCAAAGAAGATGTAGCAAAGCTGCTGGACAAACATTACCCAGGAAAGCAGGCATGGGAG
GTAACACTGAACCTGTTTCTACAGATCAATAGGAAAGATCTCTGGACAAAGGCTCAGGAAGAGATGAGAA
ATAAGCTAAACCCATACAGAAAGCATATGAAGGAAACATTTCAACTCATATGGGAGAAGGAAACCTGTCT
TCACGTCCCTGAGCATTTCTACAAAGAAACCATGAAAAATGAGTATAAAGAATTGAATGACGCATATACT
GCTGCGGCTAGACGACACACTGTGGTCCTGGAAGGTCCTGATGGAATTGGAAAAACAACCCTTTTAAGAA
AAGTGATGTTGGACTGGGCAGAGGGAAACTTATGGAAGGACAGGTTCACATTTGTGTTTTTCCTCAATGT
CTGTGAAATGAACGGTATCGCAGAGACCAGCTTACTGGAGCTCCTCTCTAGGGACTGGCCGGAGTCTTCA
GAGAAGATCGAAGACATTTTTTCCCAGCCAGAGAGAATTCTGTTCATCATGGATGGCTTTGAGCAACTGA
AGTTTAACTTACAACTTAAGGCTGACTTGAGCGATGATTGGAGGCAGCGGCAGCCAATGCCAATTATCCT
GAGCAGTTTGTTGCAAAAAAAGATGCTTCCAGAATCCTCTCTCCTTATTGCATTAGGAAAACTGGCTATG
CAAAAACACTATTTTATGTTGCGGCATCCAAAACTCATAAAGCTCTTAGGATTCAGTGAATCTGAAAAGA
AGTCGTATTTCTCCTACTTCTTTGGTGAGAAGAGCAAAGCCCTGAAAGTCTTCAATTTTGTGAGAGATAA
TGGGCCGCTGTTTATCTTGTGCCATAATCCCTTTACGTGCTGGTTGGTCTGTACTTGTGTGAAACAGAGG
CTAGAGAGGGGAGAAGACCTTGAAATAAACTCCCAAAACACCACCTATTTATATGCATCCTTTTTAACAA
CTGTATTCAAAGCAGGAAGTCAGAGTTTTCCACCTAAGGTGAACAGAGCCCGACTAAAAAGCCTGTGTGC
TTTGGCTGCAGAGGGAATTTGGACATATACATTTGTATTTTCCCATGGGGATCTCCGGAGGAATGGGTTA
TCTGAGTCTGAGGGCGTGATGTGGGTGGGTATGAGACTCCTCCAAAGGAGAGGGGACTGTTTTGCCTTCA
TGCATCTGTGTATCCAAGAGTTTTGTGCCGCCATGTTTTATTTGCTCAAACGACCCAAAGACGATCCTAA
CCCGGCCATTGGAAGCATAACCCAGCTTGTAAGAGCAAGTGTGGTTCAGCCTCAAACCCTCTTGACCCAG
GTGGGGATATTCATGTTTGGAATTTCAACAGAAGAAATCGTCAGCATGCTGGAGACCTCCTTTGGTTTTC
CACTGTCAAAAGACCTAAAGCAGGAAATAACCCAATGCCTTGAAAGTTTAAGTCAATGTGAAGCTGATAG
GGAAGCCATAGCTTTCCAGGAACTATTCATTGGTTTGTTTGAAACTCAGGAAAAAGAATTTGTAACCAAA
GTGATGAATTTCTTTGAAGAAGTTTTCATTTATATTGGTAACATAGAACATTTGGTAATAGCTTCATTCT
GCCTGAAGCATTGTCAACATTTAACGACACTTCGCATGTGTGTGGAGAATATCTTTCCAGATGACTCAGG
ATGCATCTCAGATTACAATGAGAAGCTCGTCTACTGGCGGGAGCTTTGCTCAATGTTCATTACCAACAAG
AACTTCCAGATTTTAGACATGGAAAATACCAGCCTCGATGATCCCTCCCTGGCGATTCTTTGCAAAGCGC
TGGCTCAGCCTGTTTGTAAACTCCGAAAACTCATATTTACTTCTGTGTACTTTGGACATGATTCAGAATT
ATTTAAGGCAGTTCTTCACAACCCTCATCTGAAACTTCTGAGCCTGTACGGCACTAGCCTCTCCCAGTCT
GACATCAGACACCTGTGTGAGACGCTGAAACATCCAATGTGCAAGATAGAAGAGCTGATACTGGGAAAGT
GTGACATCTCCAGTGAAGTTTGTGAAGACATCGCCTCCGTCCTGGCCTGCAACAGCAAGCTGAAACACCT
CTCCTTGGTAGAAAATCCCTTGAGGGACGAAGGAATGACGTTGCTGTGTGAAGCCCTGAAGCACTCACAC
TGTGCCCTGGAGAGGCTGATGTTGATGTACTGCTGTCTCACCTCTGTCTCCTGTGACTCCATTTCCGAAG
TCCTCTTGTGCAGTAAGTCCCTGTCCCTCCTCGATCTGGGCTCAAATGCCCTGGAAGATAATGGAGTGGC
ATCTCTGTGTGCAGCGCTGAAGCACCCAGGCTGCAGCATACGGGAGCTGTGGTTGATGGGCTGTTTCCTT
ACTTCCGATTCCTGTAAGGACATTGCTGCTGTTCTTATTTGCAATGGGAAACTGAAGACCCTGAAACTTG
GGCATAATGAAATAGGAGACACTGGTGTCAGACAGTTATGTGCAGCTTTGCAGCATCCTCACTGTAAATT
AGAGTGTCTCGGGCTGCAAACGTGTCCGATCACCCGTGCCTGCTGCGACGACATCGCCGCAGCACTCATC
GCCTGCAAAACACTGAGGAGCCTGAACCTCGACTGGATTGCCTTGGATGCTGATGCAGTGGTGGTGCTGT
GTGAGGCATTGAGCCACCCGGACTGTGCCCTGCAGATGCTGGGGCTGCACAAATCTGGCTTTGATGAAGA
AACTCAGAAGATCCTGATGTCTGTGGAAGAAAAAATTCCCCATCTGACCATTTCACATGGACCTTGGATT
GACGAGGAATACAAGATCAGGGGTGTGCTCCTCTGA

Translation (991 aa):
MAESFFSDFGLLWYLKELRKEEFWKFKELLKQPLEKFELKPIPWAELKKASKEDVAKLLDKHYPGKQAWE
VTLNLFLQINRKDLWTKAQEEMRNKLNPYRKHMKETFQLIWEKETCLHVPEHFYKETMKNEYKELNDAYT
AAARRHTVVLEGPDGIGKTTLLRKVMLDWAEGNLWKDRFTFVFFLNVCEMNGIAETSLLELLSRDWPESS
EKIEDIFSQPERILFIMDGFEQLKFNLQLKADLSDDWRQRQPMPIILSSLLQKKMLPESSLLIALGKLAM
QKHYFMLRHPKLIKLLGFSESEKKSYFSYFFGEKSKALKVFNFVRDNGPLFILCHNPFTCWLVCTCVKQR
LERGEDLEINSQNTTYLYASFLTTVFKAGSQSFPPKVNRARLKSLCALAAEGIWTYTFVFSHGDLRRNGL
SESEGVMWVGMRLLQRRGDCFAFMHLCIQEFCAAMFYLLKRPKDDPNPAIGSITQLVRASVVQPQTLLTQ
VGIFMFGISTEEIVSMLETSFGFPLSKDLKQEITQCLESLSQCEADREAIAFQELFIGLFETQEKEFVTK
VMNFFEEVFIYIGNIEHLVIASFCLKHCQHLTTLRMCVENIFPDDSGCISDYNEKLVYWRELCSMFITNK
NFQILDMENTSLDDPSLAILCKALAQPVCKLRKLIFTSVYFGHDSELFKAVLHNPHLKLLSLYGTSLSQS
DIRHLCETLKHPMCKIEELILGKCDISSEVCEDIASVLACNSKLKHLSLVENPLRDEGMTLLCEALKHSH
CALERLMLMYCCLTSVSCDSISEVLLCSKSLSLLDLGSNALEDNGVASLCAALKHPGCSIRELWLMGCFL
TSDSCKDIAAVLICNGKLKTLKLGHNEIGDTGVRQLCAALQHPHCKLECLGLQTCPITRACCDDIAAALI
ACKTLRSLNLDWIALDADAVVVLCEALSHPDCALQMLGLHKSGFDEETQKILMSVEEKIPHLTISHGPWI
DEEYKIRGVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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