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Report for CCDS31688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31688.1 Public Homo sapiens 11 FOXR1 24 110 108 CCDS HistoryNCBI Gene:283150Re-query CCDS DB by CCDS ID:31688.1Re-query CCDS DB by GeneID:283150See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317011.8 ENSP00000314806.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317011.8Link to Ensembl Protein Viewer:ENSP00000314806.3Re-query CCDS DB by Nucleotide ID:ENST00000317011Re-query CCDS DB by Protein ID:ENSP00000314806
Original member Current member NCBI NM_181721.3 NP_859072.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181721.3Link to Protein Sequence:NP_859072.1Re-query CCDS DB by Nucleotide ID:NM_181721Re-query CCDS DB by Protein ID:NP_859072Link to BLAST:NP_859072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859072.1 292 Q6PIV2-1 292 100% 0 0

Chromosomal Locations for CCDS 31688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118971932 118971992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118978782 118978856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118978957 118979204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118979442 118979668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118980490 118980728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118981208 118981236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGGAACGAGCTCTTTCTGGCCTTCACCACATCTCACCTCCCCTTAGCGGAGCAGAAACTTGCCAGGT
ATAAACTCCGAATTGTTAAGCCACCAAAATTACCCCTAGAGAAAAAACCCAACCCTGATAAGGATGGTCC
AGATTATGAGCCCAACCTCTGGATGTGGGTAAATCCCAACATTGTGTATCCCCCTGGAAAGCTGGAGGTC
TCAGGACGTAGGAAGAGGGAGGACCTGACAAGCACACTCCCCTCCTCTCAGCCACCCCAGAAGGAGGAAG
ATGCCAGCTGCTCAGAGGCCGCAGGGGTGGAATCACTGTCCCAGTCCTCCAGCAAGCGGTCTCCCCCTCG
GAAGCGGTTTGCCTTTTCCCCCAGCACCTGGGAGCTCACAGAAGAGGAGGAGGCTGAGGACCAGGAAGAC
AGCTCCTCTATGGCTCTCCCATCCCCTCACAAAAGGGCCCCCCTCCAGAGTCGGAGGCTTCGGCAAGCCA
GCAGCCAGGCGGGGAGGCTCTGGTCCCGGCCCCCTCTCAATTACTTCCACCTAATTGCCCTGGCATTAAG
AAACAGTTCCCCCTGTGGCCTCAACGTGCAACAGATCTACAGTTTCACTCGAAAGCACTTCCCCTTTTTC
CGGACGGCCCCGGAAGGCTGGAAGAATACTGTCCGTCACAATCTCTGTTTTCGAGACAGCTTTGAGAAAG
TGCCTGTCAGCATGCAGGGCGGGGCCAGCACACGGCCTCGATCTTGCCTCTGGAAGTTGACCGAGGAGGG
ACACCGCCGCTTTGCGGAGGAGGCCCGCGCCTTGGCTTCCACTCGGCTAGAAAGTATCCAACAGTGCATG
AGCCAGCCAGATGTGATGCCCTTCCTCTTTGATCTTTAA

Translation (292 aa):
MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEV
SGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQED
SSSMALPSPHKRAPLQSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFF
RTAPEGWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCM
SQPDVMPFLFDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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