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Report for CCDS2392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2392.1 Public Homo sapiens 2 LANCL1 24 110 108 CCDS HistoryNCBI Gene:10314Re-query CCDS DB by CCDS ID:2392.1Re-query CCDS DB by GeneID:10314See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233714.8 ENSP00000233714.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000233714.8Link to Ensembl Protein Viewer:ENSP00000233714.4Re-query CCDS DB by Nucleotide ID:ENST00000233714Re-query CCDS DB by Protein ID:ENSP00000233714
Original member Current member EBI ENST00000443314.5 ENSP00000388713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443314.5Link to Ensembl Protein Viewer:ENSP00000388713.1Re-query CCDS DB by Nucleotide ID:ENST00000443314Re-query CCDS DB by Protein ID:ENSP00000388713
Original member Current member EBI ENST00000441020.7 ENSP00000393323.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441020.7Link to Ensembl Protein Viewer:ENSP00000393323.3Re-query CCDS DB by Nucleotide ID:ENST00000441020Re-query CCDS DB by Protein ID:ENSP00000393323
Original member Current member EBI ENST00000450366.7 ENSP00000393597.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450366.7Link to Ensembl Protein Viewer:ENSP00000393597.2Re-query CCDS DB by Nucleotide ID:ENST00000450366Re-query CCDS DB by Protein ID:ENSP00000393597
Original member Current member EBI ENST00000448951.6 ENSP00000396518.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448951.6Link to Ensembl Protein Viewer:ENSP00000396518.2Re-query CCDS DB by Nucleotide ID:ENST00000448951Re-query CCDS DB by Protein ID:ENSP00000396518
Original member Current member EBI ENST00000431941.6 ENSP00000397646.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431941.6Link to Ensembl Protein Viewer:ENSP00000397646.2Re-query CCDS DB by Nucleotide ID:ENST00000431941Re-query CCDS DB by Protein ID:ENSP00000397646
Original member Current member NCBI NM_001136574.2 NP_001130046.1 Accepted alive Link to Nucleotide Sequence:NM_001136574.2Link to Protein Sequence:NP_001130046.1Re-query CCDS DB by Nucleotide ID:NM_001136574Re-query CCDS DB by Protein ID:NP_001130046Link to BLAST:NP_001130046.1
Original member Current member NCBI NM_001136575.2 NP_001130047.1 Accepted alive Link to Nucleotide Sequence:NM_001136575.2Link to Protein Sequence:NP_001130047.1Re-query CCDS DB by Nucleotide ID:NM_001136575Re-query CCDS DB by Protein ID:NP_001130047Link to BLAST:NP_001130047.1
Original member Current member NCBI NM_006055.3 NP_006046.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006055.3Link to Protein Sequence:NP_006046.1Re-query CCDS DB by Nucleotide ID:NM_006055Re-query CCDS DB by Protein ID:NP_006046Link to BLAST:NP_006046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001130046.1 399 O43813 399 100% 0 0
NP_001130047.1 399 O43813 399 100% 0 0
NP_006046.1 399 O43813 399 100% 0 0

Chromosomal Locations for CCDS 2392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 210434487 210434563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210435387 210435459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210436216 210436392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210437690 210437872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210440598 210440744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210441308 210441443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210455107 210455314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210471959 210472076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210476316 210476396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCTCAAAGGGCCTTCCCGAATCCTTATGCTGATTATAACAAATCCCTGGCCGAAGGCTACTTTGATG
CTGCCGGGAGGCTGACTCCTGAGTTCTCACAACGCTTGACCAATAAGATTCGGGAGCTTCTTCAGCAAAT
GGAGAGAGGCCTGAAATCAGCAGACCCTCGGGATGGCACCGGTTACACTGGCTGGGCAGGTATTGCTGTG
CTTTACTTACATCTTTATGATGTATTTGGGGACCCTGCCTACCTACAGTTAGCACATGGCTATGTAAAGC
AAAGTCTGAACTGCTTAACCAAGCGCTCCATCACCTTCCTTTGTGGGGATGCAGGCCCCCTGGCAGTGGC
CGCTGTGCTATATCACAAGATGAACAATGAGAAGCAGGCAGAAGATTGCATCACACGGCTAATTCACCTA
AATAAGATTGATCCTCATGCTCCAAATGAAATGCTCTATGGGCGAATAGGCTACATCTATGCTCTTCTTT
TTGTCAATAAGAACTTTGGAGTGGAAAAGATTCCTCAAAGCCATATTCAGCAGATTTGTGAAACAATTTT
AACCTCTGGAGAAAACCTAGCTAGGAAGAGAAACTTCACGGCAAAGTCTCCACTGATGTATGAATGGTAC
CAGGAATATTATGTAGGGGCTGCTCATGGCCTGGCTGGAATTTATTACTACCTGATGCAGCCCAGCCTTC
AAGTGAGCCAAGGGAAGTTACATAGTTTGGTCAAGCCCAGTGTAGACTACGTCTGCCAGCTGAAATTCCC
TTCTGGCAATTACCCTCCATGTATAGGTGATAATCGAGATCTGCTTGTCCATTGGTGCCATGGCGCCCCT
GGGGTAATCTACATGCTCATCCAGGCCTATAAGGTATTCAGAGAGGAAAAGTATCTCTGTGATGCCTATC
AGTGTGCTGATGTGATCTGGCAATATGGGTTGCTGAAGAAGGGATATGGGCTGTGCCACGGTTCTGCAGG
GAATGCCTATGCCTTCCTGACACTCTACAACCTCACACAGGACATGAAGTACCTGTATAGGGCCTGTAAG
TTTGCTGAATGGTGCTTAGAGTATGGAGAACATGGATGCAGAACACCAGACACCCCTTTCTCTCTCTTTG
AAGGAATGGCTGGAACAATATATTTCCTGGCTGACCTGCTAGTCCCCACAAAAGCCAGGTTCCCTGCATT
TGAACTCTGA

Translation (399 aa):
MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAV
LYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHL
NKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWY
QEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAP
GVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACK
FAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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